1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtgcttggattcccataaaacctcaaggaatagcataaagcaaaaccaaaagattgcgtatcacggcgggactatttgtaatgcgattgggtccttgatatataaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCTGGTCCGAAACTTTGCACCAGGATGGAAGCAGGTCTCCGAAGGTGGTTG
species | Physcomitrella patens |
transcript | PP1S106_16V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGACCTTCATGCTGCTGCTGAAANGG-CCNTACGGTGTCAGANGTCACAG GAAGCAACGTGACGTCAGTTEST: gi|162272414|gb|FC449053.1|FC449053
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTT
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCEST: gi|208385885|gb|DC956723.1|DC956723
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCEST: gi|100388263|gb|BY951865.1|BY951865
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: GACCTTCATGCTGCTGCTGAAAAGG-CCTTNACGGTGTCAGAGGTCACAG GGAGCAACGTGACGTCAGTTGCEST: gi|100398640|gb|BY990442.1|BY990442
genomic: GACCTTCATGCTGCTGCTGAAAAGGGCCTT-ACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGC
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCEST: gi|100385283|gb|BY950875.1|BY950875
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: TGACCTTCATGCTGCTGCTGAAAAGGGGCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGEST: gi|162269932|gb|FC445423.1|FC445423
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAG
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCEST: gi|100358870|gb|BY946730.1|BY946730
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: TGACCTTCATGCTGCTGCTGNAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTEST: gi|208361729|gb|DC934969.1|DC934969
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACT
EST: TGACCTTCATGCTGCTGCTGAAAAGG-CCTTACGGTGTCAGAGGTCACAG GAAGCANCGTGACGTCAGTEST: gi|100402552|gb|BY954892.1|BY954892
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGT
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACGGGTTCEST: gi|162264750|gb|FC440317.1|FC440317
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCEST: gi|208361815|gb|DC939037.1|DC939037
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTNACGGTGTCAGAAGTCACAG GAAGCAACGTGACGTCAGTTEST: gi|100398916|gb|BY990580.1|BY990580
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTT
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCEST: gi|208363654|gb|DC935349.1|DC935349
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: TGACCTTCATGCTGCTGCTGAAA-GGGCCTTACGGTGTCAGANGTCACAG GAAGCANCGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCEST: gi|67574343|gb|BJ947167.1|BJ947167
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTEST: gi|162266592|gb|FC441978.1|FC441978
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTT
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCEST: gi|208386186|gb|DC949097.1|DC949097
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: TCAGA-GTCACA- GAAGCAACGTGACNTCAGTTGCNGAGGATGAAGTGCTGCGTATANTGGTTTEST: gi|162274536|gb|FC450979.1|FC450979
genomic: TCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCEST: gi|22491841|gb|BU051764.1|BU051764
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCEST: gi|162262253|gb|FC437164.1|FC437164
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCEST: gi|100388495|gb|BY952097.1|BY952097
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGGGTCAGAAGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGEST: gi|100446294|gb|CJ970593.1|CJ970593
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCG
EST: TGACCTTCATGCTGCTGCTGAAA-GGGCCTTACGGTGTCAGANGTCACAG GAAGCANCGTGACGTCAGTTGCGGANGATGAAGTGCTGCGTATACEST: gi|100445835|gb|CJ970134.1|CJ970134
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATAC
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGANGTCACAG GAAGCANCGTGACGTCAGTTGCGAAGGATGAAGTGCTGCGTAEST: gi|100361912|gb|BY947689.1|BY947689
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTA
EST: TGACCTTCATGCTGCTGCTGANNAGGGC-TTACGGTGTCAGAAGTCACAG GAAGCAACGTGACGTCAGTTGCGGAAGAATGA-GTGCTGCGTATACTGGTTEST: gi|208384825|gb|DC907438.1|DC907438
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGA-TGAAGTGCTGCGTATACTGGTT
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGANGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTEST: gi|100397747|gb|BY990380.1|BY990380
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGT
EST: TGACCTTCATGCTGCTGCTGNAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCEST: gi|100364728|gb|BY947878.1|BY947878
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: TGAC-TTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTTGCG-AGGATGAAGTGCTGCGTATACTGGTTEST: gi|100401401|gb|BY990984.1|BY990984
genomic: -GACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTT-GCGGAGGATGAAGTGCTGCGTATACTGGTT
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCEST: gi|100362785|gb|BY947527.1|BY947527
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: GACCTTCATGCTGCTGCTGAAAAGGGCCCTTACG-TGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCEST: gi|162272578|gb|FC448542.1|FC448542
genomic: GACCTTCATGCTGCTGCTGAAAAGGGCC-TTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
EST: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAG GAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
genomic: TGACCTTCATGCTGCTGCTGAAAAGGGCCTTACGGTGTCAGAGGTCACAGgtatgtgctt ... taaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTC
gtatcacggcgggactatttgtaatgcgattgggtccttgatatataaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCTGGTCCGAAACTTTGCACCAGGATGGAAGCAGGTCTCCGAAGGTGGTTG
ccttgat putative branch site (score: 24)
ttgatatataaatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgcttggattcccataaaacctcaaggaatagcataaagcaaaaccaaaagattgcgtatcacggcgggactatttgtaatgcgattgggtccttgatatataaatttcagGAAGCAACGTGACGTCAGTTGCGGAGGATGAAGTGCTGCGTATACTGGTTCTGGTCCGAAACTTTGCACCAGGATGGAAGCAGGTCTCCGAAGGTGGTTG
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