Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcccaacccgaggatgactacgacctgaaattaggttatgatttgtatatggccacaaccgtgttcagattttttctacttcattacctgttcgtggtgtatcgatcatactcctaccagctaattgtgtttgttctgatacaatgttaacgttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATGAGAAAATTCGCAGTTAAGGCTTAAATTCTCATGTTTAATATGGTACTGG

Basic information

species Physcomitrella patens
transcript PP1S102_67V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S102_67V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ36169 (Selaginella moellendorffii), 3'ss of exon 2
gtatgttcccaacccgaggatgactacgacctgaaattaggttatgatttgtatatggccacaaccgtgttcagattttttctacttcattacctgttcgtggtgtatcgatcatactcctaccagctaattgtgtttgttctgatacaatgttaacgttcat--gcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATGAGAAAATTCGCAGTTAAGGCTTAAATTCTCATGTTTAATATGGTACTGG
                                                                                                      ||  |    | | | ||     || |  | |    | |     |     | |   |||  |  ||||  |||  | ||||| |||||||| |||||||| || |||||||| ||||||||||| | ||| || | ||| | |                         
------------------------------------------------------------------------------------------------------gtaaacaatttagaatctag--aggtggtggaagctctaaaactttctcgcttgtgtttcttcgcagCTTTCCCTCAAGACGGAGAAGCAAAAGAAGAAGGAGGCTTACTTCCCGATGAGAAAGTACGCTGTGAGGGCGTGA-------------------------

upper sequence: PP1S102_67V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ18648 (Selaginella moellendorffii), 3'ss of exon 3
gtatgttcccaacccgaggatgactacgacctgaaattaggttatgatttgtatatggccacaaccgtgttcagattttttctacttcattacctgttcgtggtgtatcgatcatactcctaccagctaattgtgtttgttctgatacaat---gttaacgttcat--gcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATGAGAAAATTCGCAGTTAAGGCTTAAATTCTCATGTTTAATATGGTACTGG
                                                                                                           |     ||  |||          | |||   | ||||| ||  |   |||   |||  |  ||||  |||  | ||||| |||||||| |||||||| || |||||||| ||||||||||| | ||| || | ||| | |                         
----------------------------------------------------------------------------------------------------------gtaagcaattttccattgtagaggtggtggcagctctgaaactttctcgtttgtgttttttcgcagCTTTCCCTCAAGACGGAGAAGCAAAAGAAGAAGGAGGCTTACTTCCCGATGAGAAAGTACGCTGTGAGGGCGTGA-------------------------

upper sequence: PP1S102_67V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ18646 (Selaginella moellendorffii), 3'ss of exon 3
gtatgttcccaacccgaggatgactacgacctgaaattaggttatgatttgtatatggccacaaccgtgttcagattttttctacttcattacctgttcgtggtgtatcgatcatactcctaccagctaattgtgtttgttctgatacaatgttaacgttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATGAGAAAATTCGCAGTTAAGGCTTAAATTCTCATGTTTAATATGGTACTGG
                                                                                         | | |  ||  | |  | || ||   |    |   ||||  ||     | |   | |    ||||    |    ||||  |||  | ||||| |||||||| |||||||| || |||||||| ||||||||||| | ||| || | ||| | |                         
----------------------------------------------------------------------------------------gtaaacaatt--tagaatctccattgcagaggtggaagct--ttaaaactttctcgttt--gtgtt----tcttcgcagCTTTCCCTCAAGACGGAGAAGCAAAAGAAGAAGGAGGCTTACTTCCCGATGAGAAAGTACGCTGTGAGGGCGTGA-------------------------

upper sequence: PP1S102_67V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ36167 (Selaginella moellendorffii), 3'ss of exon 3
gtatgttcccaacccgaggatgactacgacctgaaattaggttatgatttgtatatggccacaaccgtgttcagattttttctacttcattacctgttcgtggtgtatcgatcatactcctaccagctaattgtgtttgttctgatacaatgttaacgttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATGAGAAAATTCGCAGTTAAGGCTTAAATTCTCATGTT--TAATATGGTACTGG
                                                                                                           |  |  ||  |||          | |||   | | | | ||  | ||    |    ||||  |||  | ||||| |||||||| |||||||| || |||||||| ||||||||||| | ||| || | ||| | |      | |     |   ||  |    
----------------------------------------------------------------------------------------------------------gtaaacaattttccattgtagaggtggtggcagctttaaaactttctt----tcttcgcagCTTTCCCTCAAGACGGAGAAGCAAAAGAAGAAGGAGGCTTACTTCCCGATGAGAAAGTACGCTGTGAGGGCGTGAGGAGAGACGCAAGCAGCGTGAGATG--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162206021|gb|FC382806.1|FC382806
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|7286867|gb|AW599354.1|AW599354
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162204276|gb|FC379749.1|FC379749
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162253832|gb|FC430557.1|FC430557
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162245542|gb|FC423277.1|FC423277
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162215713|gb|FC391727.1|FC391727
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162230834|gb|FC406673.1|FC406673
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TTTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|67720570|gb|BJ970829.1|BJ970829
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162238304|gb|FC415872.1|FC415872
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|37849570|gb|BJ607578.1|BJ607578
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162220488|gb|FC396025.1|FC396025
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|67698434|gb|BJ958667.1|BJ958667
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162238136|gb|FC414274.1|FC414274
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162244284|gb|FC419857.1|FC419857
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAT                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|37823743|gb|BJ581809.1|BJ581809
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162254273|gb|FC429992.1|FC429992
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162272612|gb|FC447731.1|FC447731
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162226049|gb|FC401327.1|FC401327
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|7286858|gb|AW599345.1|AW599345
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|37837467|gb|BJ595475.1|BJ595475
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162279790|gb|FC455698.1|FC455698
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162206022|gb|FC382807.1|FC382807
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162252224|gb|FC425902.1|FC425902
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162252880|gb|FC429253.1|FC429253
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|15327617|gb|BI488371.1|BI488371
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162211289|gb|FC387519.1|FC387519
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162220487|gb|FC396024.1|FC396024
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162272198|gb|FC448707.1|FC448707
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162203169|gb|FC379266.1|FC379266
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         G
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcag-
EST: gi|162203169|gb|FC379266.1|FC379266
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         G
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcag-
EST: gi|162203169|gb|FC379266.1|FC379266
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         G
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcag-
EST: gi|162203169|gb|FC379266.1|FC379266
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         G
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcag-
EST: gi|162203169|gb|FC379266.1|FC379266
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         G
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcag-
EST: gi|67700386|gb|BJ960619.1|BJ960619
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|7287428|gb|AW599915.1|AW599915
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|67716488|gb|BJ966748.1|BJ966748
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|208392372|gb|DC904232.1|DC904232
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162233140|gb|FC408963.1|FC408963
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162213727|gb|FC390342.1|FC390342
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162215298|gb|FC391066.1|FC391066
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162230835|gb|FC406674.1|FC406674
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162207896|gb|FC383602.1|FC383602
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|7584135|gb|AW700032.1|AW700032
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTGGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|18358100|gb|BJ190159.1|BJ190159
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|18375472|gb|BJ207050.1|BJ207050
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162226387|gb|FC403303.1|FC403303
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|67576850|gb|BJ949674.1|BJ949674
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|6102401|gb|AW126871.1|AW126871
EST:     GCGCCCAAAGAAAACTCGTGCTATTCG-AGGGAGGTTGACAAAGCATCAG                         TCTTTCGATGAAGACCGAGGAAGCAGAAAGAAGAAAGAAAGCTTACTTT
genomic: GCGCCCAAAGAAAACTCGTGCTATTCGGAGG-AGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTT-CGATGAAGACCGAG-AAGCAGAA-GAAGAAAGAA-GCTTACTTT
EST: gi|162226881|gb|FC403069.1|FC403069
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|67574998|gb|BJ947822.1|BJ947822
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162224425|gb|FC399801.1|FC399801
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162268526|gb|FC444399.1|FC444399
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|18344543|gb|BJ176584.1|BJ176584
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162203168|gb|FC379265.1|FC379265
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         G
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcag-
EST: gi|162203168|gb|FC379265.1|FC379265
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         G
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcag-
EST: gi|162203168|gb|FC379265.1|FC379265
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         G
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcag-
EST: gi|162203168|gb|FC379265.1|FC379265
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         G
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcag-
EST: gi|162203168|gb|FC379265.1|FC379265
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         G
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcag-
EST: gi|162254272|gb|FC429991.1|FC429991
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|67725002|gb|BJ975261.1|BJ975261
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162263612|gb|FC438874.1|FC438874
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|162238303|gb|FC415871.1|FC415871
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
EST: gi|208351271|gb|DC918130.1|DC918130
EST:     TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAG                         TCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG
genomic: TGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 52

GGCTAGCCTTCGTGAAGCTTACAGCAAGAAGAAGTACCTTCCGATTGATTTGCGCCCAAAGAAAACTCGTGCTATTCGGAGGAGGTTGACAAAGCATCAGgtatgttccc ... gttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATGAGAAAATTCGCAGTTAAGGCTTAAATTCTCATGTTTAATATGGTACTGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catactcctaccagctaattgtgtttgttctgatacaatgttaacgttcatgcagTCTTCGATGAAGACCGAGAAGCAGAAGAAGAAAGAAGCTTACTTTCCGATGAGAAAATTCGCAGTTAAGGCTTAAATTCTCATGTTTAATATGGTACTGG
                                      tgttaac  putative branch site (score: 52)
                                    aatgttaa  TA-rich tract