1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttacgagtcatacttcatgtgatagcaggggcgtgatcctgactcagttgtgatgggtgtcgatgcggtgggttgactttgaaactggtaatccttcagGCTAACAAAGGAGCATATACAG
species | Physcomitrella patens |
transcript | PP1S101_227V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAACTAAACCCCATGGCGGAAGGGGAAGTCCTGAGGGTTCCTATCCCTAA GCTAACAAAGGAGCATATACAGEST: gi|208399841|gb|DC904713.1|DC904713
genomic: AAACTAAACCCCATGGCGGAAGGGGAAGTCCTGAGGGTTCCTATCCCTAAgtaaggagaa ... aatccttcagGCTAACAAAGGAGCATATACAG
EST: AAACTAAACCCNATGGCGNAAGGG-AAGTCCTGAGGGT-CCTATCCCTAN -CTANCAA-GGAGCATATACAGEST: gi|67696830|gb|BJ957063.1|BJ957063
genomic: AAACTAAACCCCATGGCGGAAGGGGAAGTCCTGAGGGTTCCTATCCCTAAgtaaggagaa ... aatccttcagGCTAACAAAGGAGCATATACAG
EST: AAACTAAACCCCATGGCGGAAGGGGAAGTCCTGAGGGTTCCTATCCCTAA GCTAACAAAGGAGCATATACAGEST: gi|208357815|gb|DC918605.1|DC918605
genomic: AAACTAAACCCCATGGCGGAAGGGGAAGTCCTGAGGGTTCCTATCCCTAAgtaaggagaa ... aatccttcagGCTAACAAAGGAGCATATACAG
EST: AAACTAAACCCCATGGCGGAAGGGGAAGTCCTGAGGGTTCCTATCCCTAA GCTAACAAAGGAGCATATACAGEST: gi|208360244|gb|DC950217.1|DC950217
genomic: AAACTAAACCCCATGGCGGAAGGGGAAGTCCTGAGGGTTCCTATCCCTAAgtaaggagaa ... aatccttcagGCTAACAAAGGAGCATATACAG
EST: AAACTAAACCCCATGGCGGAAGGGGAAGTCCCGAGGGTTCCTATCCCTAA GCTAACAAAGGAGCATATACAG
genomic: AAACTAAACCCCATGGCGGAAGGGGAAGTCCTGAGGGTTCCTATCCCTAAgtaaggagaa ... aatccttcagGCTAACAAAGGAGCATATACAG
cagttgtgatgggtgtcgatgcggtgggttgactttgaaactggtaatccttcagGCTAACAAAGGAGCATATACAG
ggttgac putative branch site (score: 1)
tccttc putative PPT
tttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttacgagtcatacttcatgtgatagcaggggcgtgatcctgactcagttgtgatgggtgtcgatgcggtgggttgactttgaaactggtaatccttcagGCTAACAAAGGAGCATATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA