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...ggatcagtggctgctatcctttgtatttggagcattggggtaggattctgaagttttatctttgtagtttagatgatgaacgtgctcgtgtatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCG
species | Physcomitrella patens |
transcript | PP1S101_184V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAG GAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCGEST: gi|162265711|gb|FC443117.1|FC443117
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCG
EST: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAG GAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCGEST: gi|100427283|gb|BY959068.1|BY959068
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCG
EST: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAG GAGATAATTGCAGCTCTTCCGGACTACTTGAAGGGTGTAGATCTTTCAGCGEST: gi|100365102|gb|BY966811.1|BY966811
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCG
EST: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAG GAGATAATTGCAGCTCTTCCGGACTACTTGAAGGGTGTAGATCTTTCAGCGEST: gi|100383898|gb|BY987155.1|BY987155
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCG
EST: TCTCACAGGTGGACGCTGTATTCTGTTGTCTTCTTCATGGGACAACTCAG GAGATAATTGCAGCTCT-CCGGGACTACTTGAAAGTTGTAGATCTTTCEST: gi|162179978|gb|FC356049.1|FC356049
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTTCCGG-ACTACTTGAAGGTTGTAGATCTTTC
EST: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAG GAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCGEST: gi|162168515|gb|FC344452.1|FC344452
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCG
EST: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAG GAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCGEST: gi|100431865|gb|BY978545.1|BY978545
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCG
EST: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAG GAGATAATTGCAGCTCTTCCGGACTACTTGAAGGNNTGTAGATCTT-CAGCEST: gi|67508394|gb|BJ941261.1|BJ941261
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGT-TGTAGATCTTTCAGC
EST: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAG GAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCGEST: gi|100379495|gb|BY949797.1|BY949797
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCG
EST: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAG GAGATAATTGCAGCTCTTCCGGACTACTTTGA-GGTTGTAGATCTTTCAGCEST: gi|162234961|gb|FC411748.1|FC411748
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTTCCGGACTACTT-GAAGGTTGTAGATCTTTCAGC
EST: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAG GAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCGEST: gi|100398471|gb|BY972624.1|BY972624
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCG
EST: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACA-CTCAG GAGATAATTGCAGCTCTTCCGGACTACTTGGAGGTEST: gi|100445108|gb|BY964407.1|BY964407
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGT
EST: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAG GAGATAATTGCAGCTCTTEST: gi|100449342|gb|CJ973641.1|CJ973641
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTT
EST: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAG GAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCANCGEST: gi|100389059|gb|BY952263.1|BY952263
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCG
EST: TCTCGCANGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAN GAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCG
genomic: TCTCGCAGGTGGACGCTGTATTCTGTTGTCTTCCTCATGGAACAACTCAGgtgtgtactt ... tatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCG
ttctgaagttttatctttgtagtttagatgatgaacgtgctcgtgtatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCG
ttttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatcagtggctgctatcctttgtatttggagcattggggtaggattctgaagttttatctttgtagtttagatgatgaacgtgctcgtgtatattgcagGAGATAATTGCAGCTCTTCCGGACTACTTGAAGGTTGTAGATCTTTCAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG