1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aggccaacctcggttctgatctagttcaacaagtaatgttgcaatcgtatacgttagttaacctgacaaatggtttggacttggtggtcattgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCACCGCCAATTTAAAGTTACCAAGGATGATTTCTGATGTCATCGTAATGTA
species | Physcomitrella patens |
transcript | PP1S101_152V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|162260100|gb|FC435819.1|FC435819
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|19789833|gb|BQ041539.1|BQ041539
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|67698345|gb|BJ958578.1|BJ958578
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|208359068|gb|DC957816.1|DC957816
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: GAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|37829125|gb|BJ587137.1|BJ587137
genomic: GAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTT-ATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|162271913|gb|FC448123.1|FC448123
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|67693552|gb|BJ953785.1|BJ953785
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|37821663|gb|BJ579729.1|BJ579729
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|162212826|gb|FC388626.1|FC388626
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|67570281|gb|BJ943105.1|BJ943105
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|67574918|gb|BJ947742.1|BJ947742
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|162264202|gb|FC440264.1|FC440264
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|208350438|gb|DC926185.1|DC926185
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACTCAEST: gi|18339343|gb|BJ171370.1|BJ171370
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|162264201|gb|FC440263.1|FC440263
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|37849706|gb|BJ607714.1|BJ607714
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|162203152|gb|FC379249.1|FC379249
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|67700113|gb|BJ960346.1|BJ960346
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|208360566|gb|DC950084.1|DC950084
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|162270551|gb|FC446073.1|FC446073
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|162212825|gb|FC388625.1|FC388625
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|208361067|gb|DC957532.1|DC957532
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|162231751|gb|FC408513.1|FC408513
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|208371458|gb|DC955794.1|DC955794
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCAEST: gi|162231752|gb|FC408514.1|FC408514
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
EST: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAA GATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
genomic: CGAACCCAGCAGATCCCGCTCAAACCGAAGCCTATCAGCTTTTTATTCAAgtatatgctc ... ttgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCA
cgtatacgttagttaacctgacaaatggtttggacttggtggtcattgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCACCGCCAATTTAAAGTTACCAAGGATGATTTCTGATGTCATCGTAATGTA
acctgac putative branch site (score: 8)
ttagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggccaacctcggttctgatctagttcaacaagtaatgttgcaatcgtatacgttagttaacctgacaaatggtttggacttggtggtcattgcttgcagGATCCAGTTGAATACAAGCGTCGTGTTAGGCAGCAAGCCAAGCAGTACCCACCGCCAATTTAAAGTTACCAAGGATGATTTCTGATGTCATCGTAATGTA
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- - - - - - - - - - - - - - - - - - tgttgca