1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccttagagactacaaggttttggtcgttccaaccctggtcccatctttgccaatattagcaactaattttttgtttttttgaatgccacggtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGAGTGCCCCGTGTGCACCCAGGTTTTTGAG
species | Physcomitrella patens |
transcript | PP1S100_61V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|18368762|gb|BJ200847.1|BJ200847
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGAACGTGGTTCACTTTGGEST: gi|162267194|gb|FC442606.1|FC442606
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGA-CGTGGTTCACTTTGG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|162209502|gb|FC386135.1|FC386135
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGTGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|162261088|gb|FC436949.1|FC436949
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|67508592|gb|BJ941454.1|BJ941454
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|67578360|gb|BJ950527.1|BJ950527
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|18338320|gb|BJ170344.1|BJ170344
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|18362314|gb|BJ194384.1|BJ194384
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|67578398|gb|BJ950565.1|BJ950565
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|15262199|gb|BI437509.1|BI437509
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: CTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|67691811|gb|BJ952044.1|BJ952044
genomic: CTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|208376809|gb|DC918750.1|DC918750
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCACGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|37848504|gb|BJ606512.1|BJ606512
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|37850045|gb|BJ608053.1|BJ608053
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|67719884|gb|BJ970143.1|BJ970143
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|37853304|gb|BJ611312.1|BJ611312
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|67701294|gb|BJ961527.1|BJ961527
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|67691886|gb|BJ952119.1|BJ952119
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|18367944|gb|BJ200028.1|BJ200028
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTEST: gi|18330512|gb|BJ162518.1|BJ162518
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTT
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGEST: gi|18372924|gb|BJ204526.1|BJ204526
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|18359903|gb|BJ191964.1|BJ191964
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|208400671|gb|DC904857.1|DC904857
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCACGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|208390277|gb|DC949517.1|DC949517
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|67695988|gb|BJ956221.1|BJ956221
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|15261952|gb|BI437262.1|BI437262
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|162209503|gb|FC386136.1|FC386136
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGTGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|37843440|gb|BJ601448.1|BJ601448
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|37851377|gb|BJ609385.1|BJ609385
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|18363668|gb|BJ195740.1|BJ195740
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAEST: gi|162267193|gb|FC442605.1|FC442605
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGA
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|208365559|gb|DC935712.1|DC935712
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|67701245|gb|BJ961478.1|BJ961478
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|67571191|gb|BJ944015.1|BJ944015
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|67727167|gb|BJ977426.1|BJ977426
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|37840814|gb|BJ598822.1|BJ598822
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|67572616|gb|BJ945440.1|BJ945440
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|67508661|gb|BJ941522.1|BJ941522
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGEST: gi|18371213|gb|BJ202815.1|BJ202815
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
EST: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTG AGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
genomic: TGAGTCGAACTACGATGAACGGATCGTTGGATGTTCAGGAGGTCTCGGTGgtaaggttct ... gtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACG
tttgccaatattagcaactaattttttgtttttttgaatgccacggtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGAGTGCCCCGTGTGCACCCAGGTTTTTGAG
aactaat putative branch site (score: 16)
aatattagcaactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttagagactacaaggttttggtcgttccaaccctggtcccatctttgccaatattagcaactaattttttgtttttttgaatgccacggtatggacagAGGACGAGCATGATGTGACGTGGTTCACTTTGGAGAAGGGCCAAACGCACGAGTGCCCCGTGTGCACCCAGGTTTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA