1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' |
gtaagtattcctttctgtgtatgcgcactgaggacacacacgaggtttgcattggagattgtttgtagtctagtaataaatggaaatggaaatatcatacataaggttatctgatgctttggatcctcattcaacgtgtgcagATCGCTATTCCATTGCGTCCAATCTGCAAGTGGTTTAGGATTTGGGGTTCAGTACGAGGAATTGCTCGGCTTTATGACGCGGCCATGGGAATAGTACTGT
species | Physcomitrella patens |
transcript | PP1S40_186V6.2 |
intron # | 33 |
splice site | 3' |
intron type | U2 |
EST: TGTTTGCAAGTATATTGGCTCTTGTTCCAACAGGCTGGGGCCTTCTCTCT ATCGCTATTCCATTGCGTCCAATCTGCAAGTGGTTTAGGATTTGGGGTTCAEST: gi|67571701|gb|BJ944525.1|BJ944525
genomic: TGTTTGCAAGTATATTGGCTCTTGTTCCAACAGGCTGGGGCCTTCTCTCTgtaagtattc ... acgtgtgcagATCGCTATTCCATTGCGTCCAATCTGCAAGTGGTTTAGGATTTGGGGTTCA
EST: GTTTGCAAGTATATTGGCTCTTGGTTCCAACAGGCTGGGGCCTTCTCTCT ATCGCTATTCCATTGCGTCCAATCTGCAAGTGGTTTAGGATTTGGGGTTCAEST: gi|67695070|gb|BJ955303.1|BJ955303
genomic: GTTTGCAAGTATATTGGCTCTT-GTTCCAACAGGCTGGGGCCTTCTCTCTgtaagtattc ... acgtgtgcagATCGCTATTCCATTGCGTCCAATCTGCAAGTGGTTTAGGATTTGGGGTTCA
EST: TGTTTGCAAGTATATTGGCTCTTGTTCCAACAGGCTGGGGCCTTCTCTCT ATCGCTATTCCATTGCGTCCAATCTGCAAGTGGTTTAGGATTTGGGGTTCA
genomic: TGTTTGCAAGTATATTGGCTCTTGTTCCAACAGGCTGGGGCCTTCTCTCTgtaagtattc ... acgtgtgcagATCGCTATTCCATTGCGTCCAATCTGCAAGTGGTTTAGGATTTGGGGTTCA
gaaatatcatacataaggttatctgatgctttggatcctcattcaacgtgtgcagATCGCTATTCCATTGCGTCCAATCTGCAAGTGGTTTAGGATTTGGGGTTCAGTACGAGGAATTGCTCGGCTTTATGACGCGGCCATGGGAATAGTACTGT
atctgat putative branch site (score: 3)
atacataa TA-rich tract