1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcgcctgtgtgcctgttgttgcatttgaacatcaagctaatctttatcaacaaacttcttattataggaactctgaaagttttgtttgtatctttcagGTCGGGTTGTTGAAAGGATGCCAGAAGGAGTAACCCACGCTTTCTTTCAACGTTTCCCATCTTTCGAAGCGCTGGAGCAGTATATGGACCACCCAGCTCG
species | Physcomitrella patens |
transcript | PP1S9_350V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTTTACTCTCTTCAATACCACTATAGAGGCATATTGGCTGTTTCTCTAG GTCGGGTTGTTGAAAGGATGCCAGAAGGAGTAACCCACGCTTTCTTTCAACEST: gi|208355623|gb|DC929915.1|DC929915
genomic: TCTTTACTCTCTTCAATACCACTATAGAGGCATATTGGCTGTTTCTCTAGgtgcgcctgt ... tatctttcagGTCGGGTTGTTGAAAGGATGCCAGAAGGAGTAACCCACGCTTTCTTTCAAC
EST: TCTTTACTCTCTTCAATACCACTATAGAGGCATATTGGCTGTTTCTCTAG GTCGGGTTGTTGAAAGGATGCCAGAAGGAGTAACCCACGCTTTCTTTCAACEST: gi|162242541|gb|FC414958.1|FC414958
genomic: TCTTTACTCTCTTCAATACCACTATAGAGGCATATTGGCTGTTTCTCTAGgtgcgcctgt ... tatctttcagGTCGGGTTGTTGAAAGGATGCCAGAAGGAGTAACCCACGCTTTCTTTCAAC
EST: TCTTTACTCTCTTCAATACCACTATAGAGGCATATTGGCTGTTTCTCTAG GTCGGGTTGTTGAAAGGATGCCAGAAGGAGTAACCCACGCTTTCTTTCAACEST: gi|162158333|gb|FC334752.1|FC334752
genomic: TCTTTACTCTCTTCAATACCACTATAGAGGCATATTGGCTGTTTCTCTAGgtgcgcctgt ... tatctttcagGTCGGGTTGTTGAAAGGATGCCAGAAGGAGTAACCCACGCTTTCTTTCAAC
EST: TCTTTACTCTCTTCAATACCACTATAGAGGCATATTGGCTGTTTCTCTAG GTCGGGTTGTTGAAAGGATGCCAGAAGGAGTAACCCACGCTTTCTTTCAACEST: gi|67574869|gb|BJ947693.1|BJ947693
genomic: TCTTTACTCTCTTCAATACCACTATAGAGGCATATTGGCTGTTTCTCTAGgtgcgcctgt ... tatctttcagGTCGGGTTGTTGAAAGGATGCCAGAAGGAGTAACCCACGCTTTCTTTCAAC
EST: TCTTTACTCTCTTCAATACCACTATAGAGGCATATTGGCTGTTTCTCTAG GTCGGGTTGTTGAAAGGATGCCAGAAGGAGTAACCCACGCTTTCTTTCAAC
genomic: TCTTTACTCTCTTCAATACCACTATAGAGGCATATTGGCTGTTTCTCTAGgtgcgcctgt ... tatctttcagGTCGGGTTGTTGAAAGGATGCCAGAAGGAGTAACCCACGCTTTCTTTCAAC
ttatcaacaaacttcttattataggaactctgaaagttttgtttgtatctttcagGTCGGGTTGTTGAAAGGATGCCAGAAGGAGTAACCCACGCTTTCTTTCAACGTTTCCCATCTTTCGAAGCGCTGGAGCAGTATATGGACCACCCAGCTCG
tatctttc CT-rich tract
aaacttcttattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcctgtgtgcctgttgttgcatttgaacatcaagctaatctttatcaacaaacttcttattataggaactctgaaagttttgtttgtatctttcagGTCGGGTTGTTGAAAGGATGCCAGAAGGAGTAACCCACGCTTTCTTTCAACGTTTCCCATCTTTCGAAGCGCTGGAGCAGTATATGGACCACCCAGCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC