1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgaatattctccatgtcaagtttatattgtgatgacttgatgctgtgggtagcttgccgatgtaagttaattttctgaatataccttatctgtgttcagGTTGCATTGAACATCAAATTAGGGCCTACAGGATTATATCTGGCCGTTCAACTTCTTGACTTGTACTGGAACCATCATCGTGAAAAGGGCAAGATTTTGG
species | Physcomitrella patens |
transcript | PP1S9_26V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGTGCATGCATCTGAAAATCGTACCATTTTGATCCACCATATGGCTGAG GTTGCATTGAACATCAAATTAGGGCCTACAGGATTATATCTGGCCGTTCAAEST: gi|162225188|gb|FC402228.1|FC402228
genomic: ACGTGCATGCATCTGAAAATCGTACCATTTTGATCCACCATATGGCTGAGgtactaattc ... ctgtgttcagGTTGCATTGAACATCAAATTAGGGCCTACAGGATTATATCTGGCCGTTCAA
EST: ACGTGCATGCATCTGAAAATCGTACCATTTTGATCCACCATATGGCTGAG GTTGCATTGAACATCAAATTAGGGCCTACAGGATTATATCTGGCCGTTCAAEST: gi|162150702|gb|FC327598.1|FC327598
genomic: ACGTGCATGCATCTGAAAATCGTACCATTTTGATCCACCATATGGCTGAGgtactaattc ... ctgtgttcagGTTGCATTGAACATCAAATTAGGGCCTACAGGATTATATCTGGCCGTTCAA
EST: ACGTGCATGCATCTGAAAATCGTACCATTTTGATCCACCATATGGCTGAG GTTGCATTGAACATCAAATTAGGGCCTACAGGATTATATCTGGCCGTTCAA
genomic: ACGTGCATGCATCTGAAAATCGTACCATTTTGATCCACCATATGGCTGAGgtactaattc ... ctgtgttcagGTTGCATTGAACATCAAATTAGGGCCTACAGGATTATATCTGGCCGTTCAA
gtgggtagcttgccgatgtaagttaattttctgaatataccttatctgtgttcagGTTGCATTGAACATCAAATTAGGGCCTACAGGATTATATCTGGCCGTTCAACTTCTTGACTTGTACTGGAACCATCATCGTGAAAAGGGCAAGATTTTGG
agttaat putative branch site (score: 4)
ccttatct putative PPT
taagttaattttctga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaatattctccatgtcaagtttatattgtgatgacttgatgctgtgggtagcttgccgatgtaagttaattttctgaatataccttatctgtgttcagGTTGCATTGAACATCAAATTAGGGCCTACAGGATTATATCTGGCCGTTCAACTTCTTGACTTGTACTGGAACCATCATCGTGAAAAGGGCAAGATTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA