1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgggctttacttatcttattgtagcatcactatcccaggtctaatctactgtagttagttctcgcttatctgcctttttgggccaatgcatttggattgtgcgttaggatgaattgtacaggtgcagttacttgacttattagttgttctacaatgcagCACCTGAAAGGTTATGGAGGAATAATTAACCATATAATGAGTATCTCACTGCGGGATGATGTTATTCCAACTGCGAAACGAGCCATGGCAGCTGGCCGCA
species | Physcomitrella patens |
transcript | PP1S9_252V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
taggatgaattgtacaggtgcagttacttgacttattagttgttctacaatgcagCACCTGAAAGGTTATGGAGGAATAATTAACCATATAATGAGTATCTCACTGCGGGATGATGTTATTCCAACTGCGAAACGAGCCATGGCAGCTGGCCGCA
acttgac putative branch site (score: 4)
ttgttct putative PPT
ttattagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggctttacttatcttattgtagcatcactatcccaggtctaatctactgtagttagttctcgcttatctgcctttttgggccaatgcatttggattgtgcgttaggatgaattgtacaggtgcagttacttgacttattagttgttctacaatgcagCACCTGAAAGGTTATGGAGGAATAATTAACCATATAATGAGTATCTCACTGCGGGATGATGTTATTCCAACTGCGAAACGAGCCATGGCAGCTGGCCGCA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG