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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttcccaacttgtactgcgagcttgataatattgattactgtgctctactgttattcgcctatcattcagaagtcgagaacatcatctaaataacaggtggcgtacaattcatttagtcattttggctctttcatgtgcttgaatagGTGATTGCAAATCGTGCGGGTGAGATTCTTGGCATTCCCATTGGCAGCAAAGGGGTCCATCCCAACGACCACGTCAATATGAGTCAGTCTTCAAATGACA

Basic information

species Physcomitrella patens
transcript PP1S9_243V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18360863|gb|BJ192926.1|BJ192926
EST:     TTGTTTGGCAAACGGGCAGCGGCACTCAAACCAACATGAACTCTAATGAG                         GTGATTGCAAATCGTGCGGGTGAGATTCTTGGCATTCCCAT
genomic: TTGTTTGGCAAACGGGCAGCGGCACTCAAACCAACATGAACTCTAATGAGgtacttccca ... gcttgaatagGTGATTGCAAATCGTGCGGGTGAGATTCTTGGCATTCCCAT
EST: gi|162192987|gb|FC369903.1|FC369903
EST:     TTGTTTGGCAAACGGGCAGCGGCACTCAAACCAACATGAACTCTAATGAG                         GTGATTGCAAATCGTGCGGGTGAGATTCTTGGCATTCCCATTGGCAGCAAA
genomic: TTGTTTGGCAAACGGGCAGCGGCACTCAAACCAACATGAACTCTAATGAGgtacttccca ... gcttgaatagGTGATTGCAAATCGTGCGGGTGAGATTCTTGGCATTCCCATTGGCAGCAAA
EST: gi|162189500|gb|FC365514.1|FC365514
EST:     TTGTTTGGCAAACGGGCAGCGGCACTCAAACCAACATGAACTCTAATGAG                         GTGATTGCAAATCGTGCGGGTGAGATTCTTGGCATTCCCATTGGCAGCAAA
genomic: TTGTTTGGCAAACGGGCAGCGGCACTCAAACCAACATGAACTCTAATGAGgtacttccca ... gcttgaatagGTGATTGCAAATCGTGCGGGTGAGATTCTTGGCATTCCCATTGGCAGCAAA
EST: gi|18361637|gb|BJ193703.1|BJ193703
EST:     TTGTTTGGCAAACGGGCAGCGGCACTCAAACCAACATGAACTCTAATGAG                         GTGATTGCAAATCGTGCGGGTGAGATTCTTGGCATTCCCATTGGCAGCA
genomic: TTGTTTGGCAAACGGGCAGCGGCACTCAAACCAACATGAACTCTAATGAGgtacttccca ... gcttgaatagGTGATTGCAAATCGTGCGGGTGAGATTCTTGGCATTCCCATTGGCAGCA
EST: gi|18368538|gb|BJ200623.1|BJ200623
EST:     TTGTTTGGCAAACGGGCAGCGGCACTCAAACCAACATGAACTCTAATGAG                         GTGATTGCAAATCGTGCGGGTGAGATTCTTGGCATTCCCATTGGCAGCA
genomic: TTGTTTGGCAAACGGGCAGCGGCACTCAAACCAACATGAACTCTAATGAGgtacttccca ... gcttgaatagGTGATTGCAAATCGTGCGGGTGAGATTCTTGGCATTCCCATTGGCAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaggtggcgtacaattcatttagtcattttggctctttcatgtgcttgaatagGTGATTGCAAATCGTGCGGGTGAGATTCTTGGCATTCCCATTGGCAGCAAAGGGGTCCATCCCAACGACCACGTCAATATGAGTCAGTCTTCAAATGACA
 aaataac  putative branch site (score: 2)
              aattcattta  TA-rich tract