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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttttatgaacatggtgatcacgtaacgtgttctgatttgaatgactttgtggtcaagtttattacctatttcatgaagatgtatgttttgtgttacagGAAGTGCGTACTGCTCTGCCGATTTGGACGCTACCTCACACCAATGGGCTGACGTCAGACGTGTCTCACTATGGCCACTCTG

Basic information

species Physcomitrella patens
transcript PP1S9_222V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100390165|gb|BY989245.1|BY989245
EST:     CTTCGGAAAATGGACATGGTCCTTCACCACCTGCGAACTCGGAGCGTCTG                         GAAGTGCGTACTGCTCTGCCGATTTGGACGCTACCTCACACCAATGGGCTG
genomic: CTTCGGAAAATGGACATGGTCCTTCACCACCTGCGAACTCGGAGCGTCTGgtaaatcttg ... tgtgttacagGAAGTGCGTACTGCTCTGCCGATTTGGACGCTACCTCACACCAATGGGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttgtggtcaagtttattacctatttcatgaagatgtatgttttgtgttacagGAAGTGCGTACTGCTCTGCCGATTTGGACGCTACCTCACACCAATGGGCTGACGTCAGACGTGTCTCACTATGGCCACTCTG
              tttattacctattt  TA-rich tract