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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaggggccctcccttcgacaaaatagtttctgcatttttggttatattcagattatactagcacttcatcagataacagtggatcggttttgtgtacagGTTGAGTACCTACCTGTTATCCATCCGACTCTTGAAGAAACAAAAAACCCAAATCTGTTTGCAGAACGAGTACGCCTTACTATGGCTCGAGCAATGAACA

Basic information

species Physcomitrella patens
transcript PP1S93_57V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162212107|gb|FC388217.1|FC388217
EST:     TTTACTGGCTTCTATTCCGACTGATGACCCAGTTTCATAACTTTATGTCG                         GTTGAGTACCTACCTGTTATCCATCCGACTCTTGAAGAAACAAAAAACCCA
genomic: TTTACTGGCTTCTATTCCGACTGATGACCCAGTTTCATAACTTTATGTCGgtacgtcctc ... ttgtgtacagGTTGAGTACCTACCTGTTATCCATCCGACTCTTGAAGAAACAAAAAACCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcagattatactagcacttcatcagataacagtggatcggttttgtgtacagGTTGAGTACCTACCTGTTATCCATCCGACTCTTGAAGAAACAAAAAACCCAAATCTGTTTGCAGAACGAGTACGCCTTACTATGGCTCGAGCAATGAACA
                          agataac  putative branch site (score: 3)
       attatacta  TA-rich tract