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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcacaacgtagaggattttgttgtttgtgtttgatgtcagcaacagaatagatgaatgcacttggaacggtcgaaaagattaggatttctgacgcgggaacttgtgtggtgttgcagGGTTCGGTACGGTAACGTGCACGTCGTGAACAATGACTACACCTCAGGGTGGGGGATTTACGCCATTGCCGGCAGCGAGGCTCCTACCATATTGAGCCAA

Basic information

species Physcomitrella patens
transcript PP1S92_84V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67508630|gb|BJ941492.1|BJ941492
EST:     AAGAATGCCAAG                         GGTTCGGTACGGTAACGTGCACGTCGTGAACAATGACTACACCTCAGGGTG
genomic: AAGAATGCCAAGgtgagtcaca ... ggtgttgcagGGTTCGGTACGGTAACGTGCACGTCGTGAACAATGACTACACCTCAGGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaacggtcgaaaagattaggatttctgacgcgggaacttgtgtggtgttgcagGGTTCGGTACGGTAACGTGCACGTCGTGAACAATGACTACACCTCAGGGTGGGGGATTTACGCCATTGCCGGCAGCGAGGCTCCTACCATATTGAGCCAA
                        ttctgac  putative branch site (score: 2)
           aaaagatta  TA-rich tract