1 5' 3' | 2 5' 3' | 3 5' 3' |
gtataatattcggtcacgctatttttgactctccatcagtccgtgctatagggaagaattgattgaattcaatactagcttggacaacggagtagagggtggactggttccatttgcagcgtgaaagcctgaccttgtaaatgtctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGAGCTACGCACTCTTCGCGATTCA
species | Physcomitrella patens |
transcript | PP1S91_124V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162249186|gb|FC421230.1|FC421230
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|19790104|gb|BQ041698.1|BQ041698
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162206952|gb|FC382961.1|FC382961
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162250758|gb|FC426607.1|FC426607
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162261360|gb|FC437793.1|FC437793
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162235317|gb|FC412284.1|FC412284
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|19785675|gb|BQ040365.1|BQ040365
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162248412|gb|FC423719.1|FC423719
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|15327271|gb|BI487857.1|BI487857
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162278671|gb|FC454781.1|FC454781
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTTTCCATTTTGTACAAGCCTEST: gi|19782732|gb|BQ039900.1|BQ039900
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162216742|gb|FC392769.1|FC392769
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|67693057|gb|BJ953290.1|BJ953290
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162250759|gb|FC426608.1|FC426608
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162201936|gb|FC376934.1|FC376934
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|37821090|gb|BJ579156.1|BJ579156
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162236136|gb|FC411125.1|FC411125
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|13251598|gb|BG362501.1|BG362501
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162227209|gb|FC402839.1|FC402839
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|7047184|gb|AW477078.1|AW477078
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTAGGCTGAGTTCTGCATTTCGTACAAGCCTEST: gi|162215961|gb|FC393418.1|FC393418
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162235548|gb|FC411852.1|FC411852
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162225783|gb|FC400723.1|FC400723
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|6102283|gb|AW126753.1|AW126753
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: TCATTTGGTGTGTACAACNGGGAAGACTTTCAACCAGGTCCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCEST: gi|162202235|gb|FC378091.1|FC378091
genomic: TCATT-GGTGTGTACAAC-GGGAAGACTTTCAACCAGGTC-GAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGC
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|67725709|gb|BJ975968.1|BJ975968
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162235316|gb|FC412283.1|FC412283
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|67569788|gb|BJ942612.1|BJ942612
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162215962|gb|FC393419.1|FC393419
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162278672|gb|FC454782.1|FC454782
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|15320389|gb|BI488399.1|BI488399
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162262992|gb|FC438800.1|FC438800
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162253163|gb|FC428995.1|FC428995
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162260278|gb|FC435581.1|FC435581
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|7067563|gb|AW497418.1|AW497418
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|37845709|gb|BJ603717.1|BJ603717
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|162235408|gb|FC411543.1|FC411543
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTEST: gi|7207283|gb|AW561286.1|AW561286
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
tggactggttccatttgcagcgtgaaagcctgaccttgtaaatgtctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGAGCTACGCACTCTTCGCGATTCA
gcctgac putative branch site (score: 52)
tgtcttt putative PPT
ttgtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatattcggtcacgctatttttgactctccatcagtccgtgctatagggaagaattgattgaattcaatactagcttggacaacggagtagagggtggactggttccatttgcagcgtgaaagcctgaccttgtaaatgtctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGAGCTACGCACTCTTCGCGATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT