1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttttaaatgggaaggcgacatgctgtgcaacgtagagtgcccatgctcatatatgctacagcttgtccagcagctgacttgagtaaactctgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATG
species | Physcomitrella patens |
transcript | PP1S90_28V6.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|100391837|gb|BY989572.1|BY989572
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG ACGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGACEST: gi|67573440|gb|BJ946264.1|BJ946264
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|18365163|gb|BJ197237.1|BJ197237
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|100377879|gb|BY986439.1|BY986439
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|162278698|gb|FC454808.1|FC454808
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: T-AAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|100361319|gb|BY965781.1|BY965781
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|18356191|gb|BJ188250.1|BJ188250
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAGGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|208385252|gb|DC915052.1|DC915052
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|208361425|gb|DC935112.1|DC935112
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|100386104|gb|BY970043.1|BY970043
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|18331507|gb|BJ163518.1|BJ163518
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|100363976|gb|BY966264.1|BY966264
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|208375453|gb|DC936996.1|DC936996
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|162225064|gb|FC401688.1|FC401688
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|100378191|gb|BY949726.1|BY949726
genomic: TGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|18360912|gb|BJ192976.1|BJ192976
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|100365162|gb|BY966841.1|BY966841
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|18364385|gb|BJ196458.1|BJ196458
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|100448660|gb|CJ972959.1|CJ972959
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|100375395|gb|BY948855.1|BY948855
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|18359114|gb|BJ191174.1|BJ191174
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|162237033|gb|FC413192.1|FC413192
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TGGGATT-CAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|18349313|gb|BJ181362.1|BJ181362
genomic: TGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|100406861|gb|BY955754.1|BY955754
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|100444932|gb|BY982760.1|BY982760
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|100388010|gb|BY988483.1|BY988483
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|100385258|gb|BY950850.1|BY950850
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|100418007|gb|BY993291.1|BY993291
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|18369448|gb|BJ201535.1|BJ201535
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATEST: gi|162158960|gb|FC334820.1|FC334820
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
EST: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCG GCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
genomic: TAAAACTGGGATTACAACCTGGGGAACTGACCATTTTCTCCAAAGAAGCGgtatattgct ... tgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGAT
ctcatatatgctacagcttgtccagcagctgacttgagtaaactctgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATG
agctgac putative branch site (score: 40)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaaatgggaaggcgacatgctgtgcaacgtagagtgcccatgctcatatatgctacagcttgtccagcagctgacttgagtaaactctgtatgacagGCGGCACCTTATGAGCGGCCTGCTCTGAGCAAAGCTTACTTGTTCCCTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG