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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattctcttctgcacaagtgctggcactgggtgttccctgttgcagagaataaaatggaatgtaaccatctcactcttcagttctccgcatgatgtccatacatagatgaggtctggttgacctttgtgaacatgttggattgcttagATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTATGCGCAGTTACGAGCGGCTGGGAAAAAACCTGACCTGGCTTTGATCGTTT

Basic information

species Physcomitrella patens
transcript PP1S90_220V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67572621|gb|BJ945445.1|BJ945445
EST:     AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAG                         ATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
genomic: AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAGgtatgattct ... gattgcttagATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
EST: gi|162169383|gb|FC345739.1|FC345739
EST:     AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAG                         ATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
genomic: AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAGgtatgattct ... gattgcttagATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
EST: gi|162152901|gb|FC329203.1|FC329203
EST:     AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAG                         ATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
genomic: AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAGgtatgattct ... gattgcttagATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
EST: gi|162186918|gb|FC362596.1|FC362596
EST:     AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAG                         ATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
genomic: AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAGgtatgattct ... gattgcttagATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
EST: gi|18327758|gb|BJ159761.1|BJ159761
EST:     AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAG                         ATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
genomic: AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAGgtatgattct ... gattgcttagATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
EST: gi|67575766|gb|BJ948590.1|BJ948590
EST:     AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAG                         ATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
genomic: AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAGgtatgattct ... gattgcttagATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
EST: gi|67717954|gb|BJ968213.1|BJ968213
EST:     AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAG                         ATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
genomic: AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAGgtatgattct ... gattgcttagATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
EST: gi|162193418|gb|FC368917.1|FC368917
EST:     AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAG                         ATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT
genomic: AATTTATCCCTGCATCACCTATTGTTCTATCGAAGGGTCCGTGGGAACAGgtatgattct ... gattgcttagATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtccatacatagatgaggtctggttgacctttgtgaacatgttggattgcttagATCCCTGGAGGAGTAACAGCTGCAAAGGGTTTTCGAGCAGCTGGTATGTATGCGCAGTTACGAGCGGCTGGGAAAAAACCTGACCTGGCTTTGATCGTTT
                      ggttgac  putative branch site (score: 4)
     atacata  TA-rich tract