1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaattttcagcctcagaattataacatgcagcatttttcgagttcttattgcatccatgcttctgctacaacataattttctatccttcacattatctgaagcttaatattctgtcatggcacagCCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATCGATGCCGGCGCTTATCCTTCTCCTCTTGGTTATGGAAGTTTTCCAAAGA
species | Physcomitrella patens |
transcript | PP1S90_139V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAG CCAGGTGTGNACA-CGGATGAAATCGATAAGGCTGTCCATCAAATGANCA-EST: gi|162163706|gb|FC339785.1|FC339785
genomic: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAGgtaaattttc ... catggcacagCCAGGTGTG-ACAACGGATGAAATCGATAAGGCTGTCCATCAAATGA-CAA
EST: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAG CCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATCEST: gi|162209804|gb|FC385738.1|FC385738
genomic: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAGgtaaattttc ... catggcacagCCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATC
EST: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAG ---G-TGTGACAACGGATGANATCGATAANGCTGTCCATCAAATGACAATCEST: gi|162279385|gb|FC455932.1|FC455932
genomic: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAGgtaaattttc ... catggcacagCCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATC
EST: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAG CCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATCEST: gi|67575419|gb|BJ948243.1|BJ948243
genomic: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAGgtaaattttc ... catggcacagCCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATC
EST: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAG CCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATCEST: gi|67698886|gb|BJ959119.1|BJ959119
genomic: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAGgtaaattttc ... catggcacagCCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATC
EST: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAG CCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATCEST: gi|100378011|gb|BY949635.1|BY949635
genomic: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAGgtaaattttc ... catggcacagCCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATC
EST: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAG CCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATCEST: gi|100361031|gb|BY946879.1|BY946879
genomic: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAGgtaaattttc ... catggcacagCCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATC
EST: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAG CCAGGTGTGACAACGGATGANATCGATAAGGCTGTCCATCAAATGACAATCEST: gi|100378215|gb|BY949738.1|BY949738
genomic: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAGgtaaattttc ... catggcacagCCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATC
EST: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAG CCAGGTGTGACAACGGATGANATCGATAAGGCTGTCCATCAAATGACAATC
genomic: CTGGTCAGCTCGCTGCCAGGGTTCTCGAGTACGCTGGAACACTGGTGAAGgtaaattttc ... catggcacagCCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATC
acataattttctatccttcacattatctgaagcttaatattctgtcatggcacagCCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATCGATGCCGGCGCTTATCCTTCTCCTCTTGGTTATGGAAGTTTTCCAAAGA
gcttaat putative branch site (score: 8)
ttctgtc CT-rich tract
ttaatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattttcagcctcagaattataacatgcagcatttttcgagttcttattgcatccatgcttctgctacaacataattttctatccttcacattatctgaagcttaatattctgtcatggcacagCCAGGTGTGACAACGGATGAAATCGATAAGGCTGTCCATCAAATGACAATCGATGCCGGCGCTTATCCTTCTCCTCTTGGTTATGGAAGTTTTCCAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG