1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagctaaactacctacacttttaggttatgtttgcgatgtatcaagtatagtcatgaagtgagttcatatttgggggttattttacactgctgtcattaagacgaatctttaggatacactaacggcgtccttttgcacgtcatggatgtagAGGGGCTTTGAGGCGCAGTGGTTATCACTCACTTTCTCCAAGGCTATATTCTTGGGCAATGGGCTGATTGCTATTCTAGCTGGGCTAGTGGCAAACACTT
species | Physcomitrella patens |
transcript | PP1S8_271V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACTGCTTTTCTCATCATTTGAGTCATGGCTCGTGGCTGAGCATTTTAAG AGGGGCTTTGAGGCGCAGTGGTTATCACTCACTTTCTCCAAGGCTATATTCEST: gi|162171811|gb|FC348454.1|FC348454
genomic: CACTGCTTTTCTCATCATTTGAGTCATGGCTCGTGGCTGAGCATTTTAAGgtagctaaac ... atggatgtagAGGGGCTTTGAGGCGCAGTGGTTATCACTCACTTTCTCCAAGGCTATATTC
EST: CACTGCTTTTCTCATCATTTGAGTCATGGCTCGTGGCTGAGCATTTTAAG AGGGGCTTTGAGGCGCAGTGGTTATCACTCACTTTCTCCAAGGCTATATTCEST: gi|162274080|gb|FC450152.1|FC450152
genomic: CACTGCTTTTCTCATCATTTGAGTCATGGCTCGTGGCTGAGCATTTTAAGgtagctaaac ... atggatgtagAGGGGCTTTGAGGCGCAGTGGTTATCACTCACTTTCTCCAAGGCTATATTC
EST: CACTGCTTTTCTCATCATTTGAGTCATGGCTCGTGGCTGAGCATTTTAAG AGGGGCTTTGAGGCGCAGTGGTTATCACTCACTTTCTCCAAGGCTATATTCEST: gi|162272123|gb|FC447917.1|FC447917
genomic: CACTGCTTTTCTCATCATTTGAGTCATGGCTCGTGGCTGAGCATTTTAAGgtagctaaac ... atggatgtagAGGGGCTTTGAGGCGCAGTGGTTATCACTCACTTTCTCCAAGGCTATATTC
EST: ACTGGCTTTTCTCATCATTTGAGTCATGGCTCGTGGCTGAGCATTTTAAG AGGGGCTTTGAGGCGCAGTGGTTATCACTCACTTTCTCCAAGGCTATATTCEST: gi|162187639|gb|FC364096.1|FC364096
genomic: ACT-GCTTTTCTCATCATTTGAGTCATGGCTCGTGGCTGAGCATTTTAAGgtagctaaac ... atggatgtagAGGGGCTTTGAGGCGCAGTGGTTATCACTCACTTTCTCCAAGGCTATATTC
EST: CACTGCTTTTCTCATCATTTGAGTCATGGCTCGTGGCTGAGCATTTTAAG AGGGGCTTTGAGGCGCAGTGGTTATCACTCACTTTCTCCAAGGCTATATTC
genomic: CACTGCTTTTCTCATCATTTGAGTCATGGCTCGTGGCTGAGCATTTTAAGgtagctaaac ... atggatgtagAGGGGCTTTGAGGCGCAGTGGTTATCACTCACTTTCTCCAAGGCTATATTC
taagacgaatctttaggatacactaacggcgtccttttgcacgtcatggatgtagAGGGGCTTTGAGGCGCAGTGGTTATCACTCACTTTCTCCAAGGCTATATTCTTGGGCAATGGGCTGATTGCTATTCTAGCTGGGCTAGTGGCAAACACTT
cactaac putative branch site (score: 7)
aatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctaaactacctacacttttaggttatgtttgcgatgtatcaagtatagtcatgaagtgagttcatatttgggggttattttacactgctgtcattaagacgaatctttaggatacactaacggcgtccttttgcacgtcatggatgtagAGGGGCTTTGAGGCGCAGTGGTTATCACTCACTTTCTCCAAGGCTATATTCTTGGGCAATGGGCTGATTGCTATTCTAGCTGGGCTAGTGGCAAACACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT