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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcgtgcgatttcatcaattttttacaactaccaaatgtaaaattctgtgcagcatttaaaatcctagaatcgggacctctcttgcaagcttttacttcttcgggattcttgagagttgcatgtatttacaagcgggataatatacggtacagGTGGCATATTCCAATTCATGTGGACGCCGCCAGCGGAGGGTTTGTGGCGCCATTTTTGTATCCCGATCTTGTTTGGGACTTCCGGCTACCATTAGTGAAG

Basic information

species Physcomitrella patens
transcript PP1S8_163V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S8_163V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv01s0011g06610.t01 (Vitis vinifera), 3'ss of exon 4
gtaagtcgtgcgatttcatcaattttttacaactaccaaatgtaaaattctgtgcagcatttaaaatcctagaatcgggacctctcttgcaagcttttacttcttcgggattcttgagagttgcat-gtatttacaagcgggataatatacggtacagGTGGCATATTCCAATTCATGTGGACGCCGCCAGCGGAGGGTTTGTGGCGCCATTTTTGTATCCCGATCTTGTTTGGGACTTCCGGCTACCATTAGTGAAG
                                                           |   |        |  |      | | || || |   |||||| |  | ||| |   ||| |    | ||  | | ||  |        |   | |||||||| | |  |||||||||||||| || ||||| ||||| |||||||| || ||||| || || || || |  ||||| ||||||||||| || ||||||
----------------------------------------------------------gtcagagcctgcctagcctcctattatattaca-gtcattacttgtgtgtgatac---agaatcatgtagttataataattgcttctgctttgcgcacagGTGGGACACCCCAATTCATGTGGATGCAGCCAGTGGAGGATTTGTGGCTCCTTTTTTATACCCAGAACTGGAATGGGATTTCCGGCTACCTTTGGTGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcgggattcttgagagttgcatgtatttacaagcgggataatatacggtacagGTGGCATATTCCAATTCATGTGGACGCCGCCAGCGGAGGGTTTGTGGCGCCATTTTTGTATCCCGATCTTGTTTGGGACTTCCGGCTACCATTAGTGAAG
                                       ataatata  TA-rich tract