Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacattcggaaataattcgattggttttttttaacataatatgctcaagttgtggatagactatgatcatgagctctgatcggggtagatggtagtgcagGGGCTGGCTTATCGAGTTCGGCAGCTATTGTCTGTTCTTCTGCAATTGCTATACTGACGGTGCTAGGGTACTCGAGCTCTAAG

Basic information

species Physcomitrella patens
transcript PP1S89_154V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100427974|gb|BY959219.1|BY959219
EST:     CAACCCGTTGTCGGGCTAAATGCTGTTGTTGACGGCATAGTTTCCATTTG                         GGGCTGGCTTATCGAGTTCGGCAGCTATTGTCTGGTCTTCTGCATTTGCT
genomic: CAACCCGTTGTCGGGCTAAATGCTGTTGTTGACGGCATAGTT-CCAATTGgtcagtctct ... ggtagtgcagGGGCTGGCTTATCGAGTTCGGCAGCTATTGTCTGTTCTTCTGCAATTGCT
EST: gi|162272815|gb|FC448803.1|FC448803
EST:     TCAACCCGTTGTCGGGCTAAATGCTGTTGTTGACGGCATAGTTCCAATTG                         GGGCTGGCTTATCGAGTTCGGCAGCTATTGTCTGTTCTTCTGCAATTGCTA
genomic: TCAACCCGTTGTCGGGCTAAATGCTGTTGTTGACGGCATAGTTCCAATTGgtcagtctct ... ggtagtgcagGGGCTGGCTTATCGAGTTCGGCAGCTATTGTCTGTTCTTCTGCAATTGCTA
EST: gi|208363621|gb|DC935330.1|DC935330
EST:     TCAACCCGTTGTCGGGCTAAATGCTGTTGTTGACGGCATAGTTCCAATTG                         GGGCTGGCTTATCGAGTTCGGCAGCTATTGTCTGTTCTTCTGCAATTGCTA
genomic: TCAACCCGTTGTCGGGCTAAATGCTGTTGTTGACGGCATAGTTCCAATTGgtcagtctct ... ggtagtgcagGGGCTGGCTTATCGAGTTCGGCAGCTATTGTCTGTTCTTCTGCAATTGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagttgtggatagactatgatcatgagctctgatcggggtagatggtagtgcagGGGCTGGCTTATCGAGTTCGGCAGCTATTGTCTGTTCTTCTGCAATTGCTATACTGACGGTGCTAGGGTACTCGAGCTCTAAG
                            ctctgat  putative branch site (score: 4)