1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agtgtggagtactgagtactttgtctgcttgtacctggaacgcaaggaagtgagaattggtagctgacatgggtgggaacttgagattcatgacttgcagGACGGAAAGGTGTGAAGGGTGCTCAGCCCGGGCCAGTGTTGGATTGGATGCAGCGAGTAAAAATAGCAGTGGGAGCTGCCAGGGGTTTGGAATATCTACA
species | Physcomitrella patens |
transcript | PP1S87_149V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTCGCTTACGAATATGCTACCATGGGATCTCTGCACGATATTCTCCACG GACGGAAAGGTGTGAAGGGTGCTCAGCCCGGGCCAGTGTTGGATTGGATGCEST: gi|6227481|gb|AW156080.1|AW156080
genomic: GCTCGCTTACGAATATGCTACCATGGGATCTCTGCACGATATTCTCCACGgtgcgtgctc ... tgacttgcagGACGGAAAGGTGTGAAGGGTGCTCAGCCCGGGCCAGTGTTGGATTGGATGC
EST: GCTCGCTTACGAATATGCTACCATGGGATCTCTGCACGATATTCTCCACG GACGGAAAGGTGTGAAGGGTGCTCAGCCCGGGCCAGTGTTGGATTGGATGC
genomic: GCTCGCTTACGAATATGCTACCATGGGATCTCTGCACGATATTCTCCACGgtgcgtgctc ... tgacttgcagGACGGAAAGGTGTGAAGGGTGCTCAGCCCGGGCCAGTGTTGGATTGGATGC
ggaagtgagaattggtagctgacatgggtgggaacttgagattcatgacttgcagGACGGAAAGGTGTGAAGGGTGCTCAGCCCGGGCCAGTGTTGGATTGGATGCAGCGAGTAAAAATAGCAGTGGGAGCTGCCAGGGGTTTGGAATATCTACA
agctgac putative branch site (score: 29)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtggagtactgagtactttgtctgcttgtacctggaacgcaaggaagtgagaattggtagctgacatgggtgggaacttgagattcatgacttgcagGACGGAAAGGTGTGAAGGGTGCTCAGCCCGGGCCAGTGTTGGATTGGATGCAGCGAGTAAAAATAGCAGTGGGAGCTGCCAGGGGTTTGGAATATCTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC