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...ttgacttcattacgaatttcatgaaaataagcgtaaccatatattcctagtgtattgcaagatgacagcttctcatatattatatctcaatttgtgacagGCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAGAGGTTGTTGCACTTCTGGATATCACAAAATGTCTCTACGATGCTATTGCTCGCATGGAGCGGGC
species | Physcomitrella patens |
transcript | PP1S86_24V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAG GCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAGAGGTTGTTGCACTTCEST: gi|18330771|gb|BJ162777.1|BJ162777
genomic: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAGgtgctgtact ... tttgtgacagGCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAGAGGTTGTTGCACTTC
EST: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAG GCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAGAGGTTGTTGCACTTCEST: gi|18342907|gb|BJ174943.1|BJ174943
genomic: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAGgtgctgtact ... tttgtgacagGCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAGAGGTTGTTGCACTTC
EST: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAG GCAAGTTCAGGCATTTGCCTGTAGTGGAEST: gi|100383782|gb|BY969311.1|BY969311
genomic: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAGgtgctgtact ... tttgtgacagGCAAGTTCAGGCATTTGCCTGTAGTGGA
EST: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAG GCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAGAGGTTGTTGCACTTCEST: gi|18346829|gb|BJ178874.1|BJ178874
genomic: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAGgtgctgtact ... tttgtgacagGCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAGAGGTTGTTGCACTTC
EST: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAG GCAAGTTCAGGCATTTGCCTGTAGEST: gi|100446857|gb|CJ971156.1|CJ971156
genomic: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAGgtgctgtact ... tttgtgacagGCAAGTTCAGGCATTTGCCTGTAG
EST: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAG GCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAGAGGTTGTTGCACTTCEST: gi|18331556|gb|BJ163567.1|BJ163567
genomic: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAGgtgctgtact ... tttgtgacagGCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAGAGGTTGTTGCACTTC
EST: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAG GCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGEST: gi|162166444|gb|FC342426.1|FC342426
genomic: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAGgtgctgtact ... tttgtgacagGCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGG
EST: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAG GCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAGAGGTTGTTGCACTTCEST: gi|18330917|gb|BJ162923.1|BJ162923
genomic: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAGgtgctgtact ... tttgtgacagGCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAGAGGTTGTTGCACTTC
EST: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAG GCAAGTTCAGGCATTTGCCTGTAGTGGAGAAEST: gi|100352242|gb|BY983110.1|BY983110
genomic: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAGgtgctgtact ... tttgtgacagGCAAGTTCAGGCATTTGCCTGTAGTGGAGAA
EST: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCCAG GCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAAAGGTTGTTGCACTTC
genomic: TGTTATGGGAGATACTCTTGCAGTGGAAGCATTACAGAAGATGGTTCAAGgtgctgtact ... tttgtgacagGCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAGAGGTTGTTGCACTTC
cctagtgtattgcaagatgacagcttctcatatattatatctcaatttgtgacagGCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAGAGGTTGTTGCACTTCTGGATATCACAAAATGTCTCTACGATGCTATTGCTCGCATGGAGCGGGC
tcatatattatatctc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgacttcattacgaatttcatgaaaataagcgtaaccatatattcctagtgtattgcaagatgacagcttctcatatattatatctcaatttgtgacagGCAAGTTCAGGCATTTGCCTGTAGTGGAGAATGGAGAGGTTGTTGCACTTCTGGATATCACAAAATGTCTCTACGATGCTATTGCTCGCATGGAGCGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA