Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacgcgttgatgactctacccccggccattcgctgtaggatctcgtactgctcaattcctgtatgtcaatgtctcatttcaacctcacatccaccgagttgaaaaacagttcacgaatcatgagctgacagtgctcacacgttgttgttgttgatactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGAGGCCGGTGCTGGCAAGCACATCCAGGCTGGAGCCAAGAAGGTATTGATC

Basic information

species Physcomitrella patens
transcript PP1S86_156V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S86_156V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT1G12900.3 (Arabidopsis thaliana), 3'ss of exon 3
gtaagtacgcgttgatgactctacccccggccattcgctgtaggatctcgtactgctcaattcctgtatgtcaatgtctcatttcaacctcacatccaccgagttgaaa-aacagttcacgaatca--tgagctgacagtgctcacacg---ttgttgttgttgatactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGAGGCCGGTGCTGGCAAGCACATCCAGGCTGGAGCCAAGAAGGTATTGATC
                                                                                                     |||| ||| |||| ||| |  ||||  |||  |||     | ||        |     || ||||  |  | |||||  | | ||| ||  | || ||||| ||||||||||||||||| |||   | ||||||||| |||||| | ||||||||||||||||||||  | |||
--------------------------------------------------------------------------------------------------gtaagttaaaacaacacttctcatatcatttgaattgaatcaacccagttagatctaaacctggtgatgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGAGACGGTGCTGGGAAGCACCTTCAGGCTGGAGCCAAGAAGGTTCTTATC

upper sequence: PP1S86_156V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT1G12900.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaagtacgcgttgatgactctacccccggccattcgctgtaggatctcgtactgctcaattcctgtatgtcaatgtctcatttcaacctcacatccaccgagttgaaa-aacagttcacgaatca--tgagctgacagtgctcacacgttgttg---ttgttgatactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGAGGCCGGTGCTGGCAAGCACATCCAGGCTGGAGCCAAGAAGGTATTGATC
                                                                                                      ||| ||| |||| ||| |  ||||  |||  |||     | ||        |     || ||||  |  | |||||  | | ||| ||  | || ||||| ||||||||||||||||| |||   | ||||||||| |||||| | ||||||||||||||||||||  | |||
------------------------------------------------------------------------------------------------------gttaaaacaacacttctcatatcatttgaattgaatcaacccagttagatctaaacctggtgatgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGAGACGGTGCTGGGAAGCACCTTCAGGCTGGAGCCAAGAAGGTTCTTATC

upper sequence: PP1S86_156V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT3G26650.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagtacgcgttgatgactctacccccggccattcgctgtaggatctcgtactgctcaattcctgtatgtcaatgtctcatttcaacctcacatccaccgagttgaaaaacagttcacgaatcatgagctgacagtgctcacacg---ttgttgttgttgatactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGAGGCCGGTGCTGGCAAGCACATCCAGGCTGGAGCCAAGAAGGTATTGATC
                                                                                   | |  |  | | ||||  |  |||    ||||      |||   ||   | | |   ||   |   | | | | |||| ||    | |||||  | |  || ||  | |||||||| ||||||||||||||||||||    |  ||||| || || |||||  | ||||| |||||||||||  | || 
----------------------------------------------------------------------------------gtaagtcgaaaaaccacttatgtgat---cagtctttttatctcaagtctagaataagcatttgaattggatatggttggtatc--ttagGGAGCTAGGAATTGACATTGTCATCGAAGGAACCGGAGTGTTTGTGGATAGAGAAGGTGCAGGGAAACACATTGAAGCTGGTGCCAAGAAGGTTATCATT

upper sequence: PP1S86_156V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv14s0068g00680.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtacgcgttgatgactctacccccggccattcgctgtaggatctcgtactgctcaattcctgtatgtcaatgtctcatttcaacctcacatccaccgagttgaaaaacagttcacgaatcatgagctgacagtgctcacacgttgttgttgttgatactca--tcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGAGGCCGGTGCTGGCAAGCACATCCAGGCTGGAGCCAAGAAGGTATTGATC
                                                                          |  || ||   || | | |||| |     ||| |    | |  || ||| | |   | ||| |  | |   ||  | | | ||| |||      ||||||| ||||||| ||||| || || || || || || ||||||||||||   |  ||||| ||||||||||||||||| || |||||||||||  | |||
-------------------------------------------------------------------------gtaactaatactaatcacccatcaagttttttggatcg-aatggactaatta-gcattcacattcataatg-gtgatggcttttgttacatggtccagGGACTTGGACATTGATCTAGTGATAGAAGGGACAGGGGTGTTTGTGGACAGAGATGGTGCAGGCAAGCACATCCAGGCAGGGGCCAAGAAGGTGCTCATC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208393166|gb|DC907989.1|DC907989
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGGGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100440793|gb|BY980613.1|BY980613
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100420462|gb|BY976031.1|BY976031
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGNTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162190918|gb|FC368116.1|FC368116
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162178397|gb|FC354121.1|FC354121
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162199260|gb|FC375096.1|FC375096
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162196266|gb|FC374348.1|FC374348
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162183648|gb|FC359070.1|FC359070
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162170135|gb|FC347047.1|FC347047
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162176598|gb|FC353067.1|FC353067
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162263595|gb|FC440105.1|FC440105
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|67507784|gb|BJ940662.1|BJ940662
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162236333|gb|FC411452.1|FC411452
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100389555|gb|BY989033.1|BY989033
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162218959|gb|FC395178.1|FC395178
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100394378|gb|BY972039.1|BY972039
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATNGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162153557|gb|FC330145.1|FC330145
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162223571|gb|FC399708.1|FC399708
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100425421|gb|BY958586.1|BY958586
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACTA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100363831|gb|BY966192.1|BY966192
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100396366|gb|BY990094.1|BY990094
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162155485|gb|FC330968.1|FC330968
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100352166|gb|BY983072.1|BY983072
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACGGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162171442|gb|FC346717.1|FC346717
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162158674|gb|FC335548.1|FC335548
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|208357356|gb|DC910711.1|DC910711
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162183743|gb|FC360660.1|FC360660
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|208376981|gb|DC910815.1|DC910815
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162183960|gb|FC359330.1|FC359330
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100416539|gb|BY975438.1|BY975438
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACGGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162194766|gb|FC371613.1|FC371613
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162187317|gb|FC363475.1|FC363475
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162216599|gb|FC393523.1|FC393523
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|208347100|gb|DC909370.1|DC909370
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|18373797|gb|BJ205375.1|BJ205375
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAG
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAG
EST: gi|162181161|gb|FC357606.1|FC357606
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162174298|gb|FC350681.1|FC350681
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100382379|gb|BY969093.1|BY969093
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACTGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162233187|gb|FC409010.1|FC409010
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162182910|gb|FC358968.1|FC358968
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162179847|gb|FC355918.1|FC355918
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|208349869|gb|DC905993.1|DC905993
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100443668|gb|BY963765.1|BY963765
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100395353|gb|BY953695.1|BY953695
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162220632|gb|FC396844.1|FC396844
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162155514|gb|FC330984.1|FC330984
EST:     GTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: GTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|67575170|gb|BJ947994.1|BJ947994
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTTGTGGACG
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTT-GTGGACG
EST: gi|162181199|gb|FC357319.1|FC357319
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162229372|gb|FC405563.1|FC405563
EST:     AAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|208348576|gb|DC913248.1|DC913248
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGNACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162181006|gb|FC358660.1|FC358660
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100399917|gb|BY990686.1|BY990686
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162195313|gb|FC369807.1|FC369807
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100363427|gb|BY966383.1|BY966383
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162205382|gb|FC382091.1|FC382091
EST:     TCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: TCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162205701|gb|FC381903.1|FC381903
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162255129|gb|FC430744.1|FC430744
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100446404|gb|CJ970703.1|CJ970703
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162179883|gb|FC355954.1|FC355954
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162185742|gb|FC362090.1|FC362090
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100362294|gb|BY947287.1|BY947287
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162179884|gb|FC355955.1|FC355955
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162156183|gb|FC332558.1|FC332558
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162250406|gb|FC426268.1|FC426268
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100365598|gb|BY966676.1|BY966676
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162280151|gb|FC455960.1|FC455960
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100448710|gb|CJ973009.1|CJ973009
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162177680|gb|FC353266.1|FC353266
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100388914|gb|BY988790.1|BY988790
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAATCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|67716774|gb|BJ967034.1|BJ967034
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162169787|gb|FC345324.1|FC345324
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162177997|gb|FC354103.1|FC354103
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162186572|gb|FC363336.1|FC363336
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|67569967|gb|BJ942791.1|BJ942791
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGA
EST: gi|100410898|gb|BY956238.1|BY956238
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGGAGTGTT-GTGGACG
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGG-AGTGTTTGTGGACG
EST: gi|162161465|gb|FC337645.1|FC337645
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162226328|gb|FC403244.1|FC403244
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162186910|gb|FC362588.1|FC362588
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100426520|gb|BY977289.1|BY977289
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|18326015|gb|BJ158014.1|BJ158014
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACG
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACG
EST: gi|162156337|gb|FC332361.1|FC332361
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162176839|gb|FC353347.1|FC353347
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162166002|gb|FC341807.1|FC341807
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162189974|gb|FC365625.1|FC365625
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162181073|gb|FC357258.1|FC357258
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100383745|gb|BY969274.1|BY969274
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100399895|gb|BY990675.1|BY990675
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100370919|gb|BY968120.1|BY968120
EST:     AGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTTGC-ATGGGG                         GGACATGGACATCGATCTCGTC
genomic: AGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTT-GCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTC
EST: gi|162170005|gb|FC345058.1|FC345058
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162154874|gb|FC331916.1|FC331916
EST:     CAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: CAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100390771|gb|BY989254.1|BY989254
EST:     AAGGTCATCAAGGTGGTGTCCGGCAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAATGTTTGTGGACCA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162163473|gb|FC340007.1|FC340007
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162178215|gb|FC354933.1|FC354933
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162188129|gb|FC363895.1|FC363895
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162256719|gb|FC433237.1|FC433237
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100407013|gb|BY973966.1|BY973966
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGNACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACAA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100438447|gb|BY979961.1|BY979961
EST:     AAGGTCATCAAGGTGGGGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATC
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATC
EST: gi|162260769|gb|FC435421.1|FC435421
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|208357626|gb|DC914026.1|DC914026
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100418087|gb|BY993329.1|BY993329
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100443404|gb|BY963700.1|BY963700
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162165097|gb|FC341118.1|FC341118
EST:     AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGG                         GGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 59

TCGATGCCGATGTTAAGGTGGAGGGCAATGACGCCATCAGCGTGGACGGCAAGGTCATCAAGGTGGTGTCCGACAGGAACCCACTCAACTTGCCATGGGGgtaagtacgc ... tactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGAGGCCGGTGCTGGCAAGCACATCCAGGCTGGAGCCAAGAAGGTATTGATC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtacgcgttgatgactctacccccggccattcgctgtaggatctcgtactgctcaattcctgtatgtcaatgtctcatttcaacctcacatccaccgagttgaaaaacagttcacgaatcatgagctgacagtgctcacacgttgttgttgttgatactcatcagGGACATGGACATCGATCTCGTCATCGAGGGAACCGGAGTGTTTGTGGACGAGGCCGGTGCTGGCAAGCACATCCAGGCTGGAGCCAAGAAGGTATTGATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG