1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gcttgtgacctaaatattgaaataggaaagtttggctgttagaagagagcatgtttttctgaacttcttggtcattaatacgtttacttttccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCTCTTGGTGGAAGCATTCATCGCAATTATGATTTACTTCTGCGTCATCGGC
species | Physcomitrella patens |
transcript | PP1S84_76V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAG GCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCTEST: gi|100415542|gb|BY992893.1|BY992893
genomic: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAGgtgtagtgca ... tccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCT
EST: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAG GCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCTEST: gi|162196647|gb|FC374937.1|FC374937
genomic: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAGgtgtagtgca ... tccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCT
EST: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAG GCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCTEST: gi|208360694|gb|DC930491.1|DC930491
genomic: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAGgtgtagtgca ... tccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCT
EST: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAG GCANTANAGCTTTGGCTGGEST: gi|208363461|gb|DC939708.1|DC939708
genomic: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAGgtgtagtgca ... tccaagccagGCAGTAGAGCTTTGGCTGG
EST: ATCCTAGGTGTGAGGCTGCTCCTTGTGAACAGTTTGAAGCTGCTTTTCAG GCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCTEST: gi|208365784|gb|DC951047.1|DC951047
genomic: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAGgtgtagtgca ... tccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCT
EST: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAG GCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCTEST: gi|208376666|gb|DC932130.1|DC932130
genomic: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAGgtgtagtgca ... tccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCT
EST: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAG GCAGTAAAGCTTTGGCTGGTTGACAGANCAGTGTTGCCGATAGA-AANTCTEST: gi|100407545|gb|BY991747.1|BY991747
genomic: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAGgtgtagtgca ... tccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCT
EST: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAG GCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCTEST: gi|208356936|gb|DC942682.1|DC942682
genomic: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAGgtgtagtgca ... tccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCT
EST: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAG GCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCTEST: gi|100372584|gb|BY948605.1|BY948605
genomic: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAGgtgtagtgca ... tccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCT
EST: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAG GCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGANGA-TTCEST: gi|100394488|gb|BY972090.1|BY972090
genomic: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAGgtgtagtgca ... tccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGA-GAATTC
EST: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAG GCAGTAGAGCTTTGGCTGGTTGACAGAGCAGEST: gi|100405446|gb|BY955529.1|BY955529
genomic: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAGgtgtagtgca ... tccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAG
EST: TCCTAGGTGTGAGGCTGTTCCTTTGTGA-CAGTTTGAAGCTGCTTTTCAG GCAGTAGAGCTTTGGCTGGGTGACAGAGCAGTGTTGCCGATAGAGAEST: gi|208362206|gb|DC939630.1|DC939630
genomic: TCCTAGGTGTGAGGCTGTTCCTT-GTGAACAGTTTGAAGCTGCTTTTCAGgtgtagtgca ... tccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGA
EST: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAG GCAGTANAGCTTTGGCTGGTTGACAGANCAGTGTTGCCGATANANAATTCTEST: gi|100451701|gb|CJ974898.1|CJ974898
genomic: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAGgtgtagtgca ... tccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCT
EST: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAG GCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCT
genomic: ATCCTAGGTGTGAGGCTGTTCCTTGTGAACAGTTTGAAGCTGCTTTTCAGgtgtagtgca ... tccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCT
agagcatgtttttctgaacttcttggtcattaatacgtttacttttccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCTCTTGGTGGAAGCATTCATCGCAATTATGATTTACTTCTGCGTCATCGGC
cattaat putative branch site (score: 3)
tttacttttcc putative PPT
tcattaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttgtgacctaaatattgaaataggaaagtttggctgttagaagagagcatgtttttctgaacttcttggtcattaatacgtttacttttccaagccagGCAGTAGAGCTTTGGCTGGTTGACAGAGCAGTGTTGCCGATAGAGAATTCTCTTGGTGGAAGCATTCATCGCAATTATGATTTACTTCTGCGTCATCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG