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...aatagggatgcagttctttctatgatgctatgggcggctttgtcaaagtattctggccagtaaaagctgactcacactattcattcgtttgctgtgttagGATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGATTCCACTCAGCTTTTCGATTCCTATCACCCCCTTTATGTCAG
species | Physcomitrella patens |
transcript | PP1S83_225V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTG GATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGAEST: gi|162175228|gb|FC351426.1|FC351426
genomic: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTGgtgagattca ... gctgtgttagGATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGA
EST: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTG GATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGAEST: gi|18372680|gb|BJ204282.1|BJ204282
genomic: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTGgtgagattca ... gctgtgttagGATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGA
EST: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTG GATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGAEST: gi|162154923|gb|FC331965.1|FC331965
genomic: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTGgtgagattca ... gctgtgttagGATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGA
EST: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTG GATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGAEST: gi|67570297|gb|BJ943121.1|BJ943121
genomic: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTGgtgagattca ... gctgtgttagGATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGA
EST: GCAGATTGTTGGTTGGTGANATGGGGCAAAGTCTACNATGTCACAAGCTG GATTCCCAATCATCCGGGGGGCAGTCTCATCCAEST: gi|162163911|gb|FC340133.1|FC340133
genomic: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTGgtgagattca ... gctgtgttagGATTCCCAATCATCCGGGGGGCAGTCTCATCCA
EST: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTG GATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGAEST: gi|100416037|gb|BY957047.1|BY957047
genomic: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTGgtgagattca ... gctgtgttagGATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGA
EST: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTG GATTCCCAATCATCCNGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGAEST: gi|208394363|gb|DC904183.1|DC904183
genomic: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTGgtgagattca ... gctgtgttagGATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGA
EST: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTG GATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGA
genomic: GCAGATTGTTGGTTGGTGATATGGGGCAAAGTCTACGATGTCACAAGCTGgtgagattca ... gctgtgttagGATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGA
aagtattctggccagtaaaagctgactcacactattcattcgtttgctgtgttagGATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGATTCCACTCAGCTTTTCGATTCCTATCACCCCCTTTATGTCAG
gactcac putative branch site (score: 38)
tattcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatagggatgcagttctttctatgatgctatgggcggctttgtcaaagtattctggccagtaaaagctgactcacactattcattcgtttgctgtgttagGATTCCCAATCATCCGGGGGGCAGTCTCATCCACGTAAAAGCAGGGCAGGATTCCACTCAGCTTTTCGATTCCTATCACCCCCTTTATGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT