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gttaatttttgatttctagactggacctttttcttctgcattcgtcatggacagggtaaacgattttaagttgggtcaagcctcaaggaagtcatgctgagctttgcaagagattgtggccgggagtataattgacgttttttacgctttggttatgctgcagGAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTTTACACTGACAGTTCCAGCAGGAGAACCAGAG
species | Physcomitrella patens |
transcript | PP1S83_162V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAG GAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTTEST: gi|208347445|gb|DC909752.1|DC909752
genomic: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAGgttaattttt ... tatgctgcagGAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTT
EST: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAG GAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGC-TTEST: gi|162240627|gb|FC419365.1|FC419365
genomic: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAGgttaattttt ... tatgctgcagGAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTT
EST: GGTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAG GAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTTEST: gi|18372591|gb|BJ204193.1|BJ204193
genomic: GGTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAGgttaattttt ... tatgctgcagGAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTT
EST: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAG GAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTTEST: gi|18356123|gb|BJ188182.1|BJ188182
genomic: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAGgttaattttt ... tatgctgcagGAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTT
EST: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAG GAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTTEST: gi|18354019|gb|BJ186074.1|BJ186074
genomic: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAGgttaattttt ... tatgctgcagGAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTT
EST: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAG GAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGGTGTGCTTEST: gi|18349502|gb|BJ181551.1|BJ181551
genomic: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAGgttaattttt ... tatgctgcagGAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGG-TGTGCTT
EST: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAG GAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTTEST: gi|162150536|gb|FC326392.1|FC326392
genomic: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAGgttaattttt ... tatgctgcagGAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTT
EST: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAG GAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTTEST: gi|18349065|gb|BJ181114.1|BJ181114
genomic: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAGgttaattttt ... tatgctgcagGAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTT
EST: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAG GAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTTEST: gi|18345693|gb|BJ177736.1|BJ177736
genomic: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAGgttaattttt ... tatgctgcagGAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTT
EST: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAG GAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTT
genomic: GTAGTCTTGATGGCCTTTGAATGTCCGCACTGCAACGAAAGgttaattttt ... tatgctgcagGAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTT
agagattgtggccgggagtataattgacgttttttacgctttggttatgctgcagGAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTTTACACTGACAGTTCCAGCAGGAGAACCAGAG
aattgac putative branch site (score: 3)
agtataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaatttttgatttctagactggacctttttcttctgcattcgtcatggacagggtaaacgattttaagttgggtcaagcctcaaggaagtcatgctgagctttgcaagagattgtggccgggagtataattgacgttttttacgctttggttatgctgcagGAATAACGAAGTTCAGTTCGCTGGCCAATTGCAACCGCAGGGGTGTGCTTTTACACTGACAGTTCCAGCAGGAGAACCAGAG
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