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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtgtatgttgttttacttcactttatgcctggggatgtgtcggatactagaatgaatgtgaatttgcaatgtttaagaacgcgtcgttgtgtttgtcctgctgttttctttccctcttacagtcaacctattcaaattttctgcttattaatatggttttcttgcagCTTTCGATGAAATCAGCCAGTGAGTTTATCTCAACATTCGACCCCTCGGTGCAT

Basic information

species Physcomitrella patens
transcript PP1S82_30V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208374665|gb|DC931990.1|DC931990
EST:     GTGCATTTCTACAAATCCTTCTGCAGTCTTTGAATAGCAACAACAAAGAA                         CTTTCGATGAAATCAGCCAGTGAGTTTATCTCAACATTCGACCCCTCGGTG
genomic: GTGCATTTCTACAAATCCTTCTGCAGTCTTTGAATAGCAACAACAAAGAAgtaagtgtgt ... tttcttgcagCTTTCGATGAAATCAGCCAGTGAGTTTATCTCAACATTCGACCCCTCGGTG
EST: gi|100426566|gb|BY977294.1|BY977294
EST:     GTGCATTTCTACAAATCCTTCTGCAGTCTTTGAATAGCAACAACAAAGAA                         CTTTCGATGAAATCAGCCAGTGAGTTTATCTCAACATTCGACCCCTCGGTG
genomic: GTGCATTTCTACAAATCCTTCTGCAGTCTTTGAATAGCAACAACAAAGAAgtaagtgtgt ... tttcttgcagCTTTCGATGAAATCAGCCAGTGAGTTTATCTCAACATTCGACCCCTCGGTG
EST: gi|18331006|gb|BJ163012.1|BJ163012
EST:     GTGCATTTCTACAAATCCTTCTGCAGTCTTTGAATAGCAACAACAAAGAA                         CTTTCGATGAAATCAGCCAGTGAGTTTATCTCAACATTCGACCCCTCGGTG
genomic: GTGCATTTCTACAAATCCTTCTGCAGTCTTTGAATAGCAACAACAAAGAAgtaagtgtgt ... tttcttgcagCTTTCGATGAAATCAGCCAGTGAGTTTATCTCAACATTCGACCCCTCGGTG
EST: gi|162228506|gb|FC404130.1|FC404130
EST:     GTGCATTTCTACAAATCCTTCTGCAGTCTTTGAATAGCAACAACAAAGAA                         CTTTCGATGAAATCAGCCAGTGAGTTTATCTCAACATTCGACCCCTCGGTG
genomic: GTGCATTTCTACAAATCCTTCTGCAGTCTTTGAATAGCAACAACAAAGAAgtaagtgtgt ... tttcttgcagCTTTCGATGAAATCAGCCAGTGAGTTTATCTCAACATTCGACCCCTCGGTG
EST: gi|18326763|gb|BJ158763.1|BJ158763
EST:     GTGCATTTCTACAAATCCTTCTGCAGTCTTTGAATAGCAACAACAAAGAA                         CTTTCGATGAAATCAG
genomic: GTGCATTTCTACAAATCCTTCTGCAGTCTTTGAATAGCAACAACAAAGAAgtaagtgtgt ... tttcttgcagCTTTCGATGAAATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcttacagtcaacctattcaaattttctgcttattaatatggttttcttgcagCTTTCGATGAAATCAGCCAGTGAGTTTATCTCAACATTCGACCCCTCGGTGCAT
                                 tattaat  putative branch site (score: 2)
                                            ttttcttgc  putative PPT
                     aaattttctgcttatt  TA-rich tract