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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctctcataatatttatgatctcacttggtaaagttaaagatggcgttctaagttatttgctttaagcatcaaattggtctgtactcctacagtgtaattccgtaactaagcagcacatgcgactttatatttcaacatagaagttctcaggtactaactttcatacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTCCGAGGAGGTTGGATGGCACCATTACGATACCATCAAAGAGTTGGAGGAG

Basic information

species Physcomitrella patens
transcript PP1S80_110V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S80_110V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G072315_T01 (Zea mays), 3'ss of exon 2
gtgagtctctcataatatttatgatctcacttggtaaagttaaagatggcgttctaagttatttgctttaagcatcaaattggtctgtactcctacagtgtaattccgtaactaagcagcacatgcgactttatatttcaacatagaagttctcaggtactaactttcatacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTCCGAGGAGGTTGGATGGCACCATTACGATACCATCAAAGAGTTGGAGGAG
                                                                              |   ||||    |  ||    | | || | | | | |   ||  ||   || || | ||      |     |  || | |  |    | | ||       |||| ||||||||||||||||||||||||| |||  |  | ||     | ||  ||||||| |||||| || |  | || |||||||              
----------------------------------------------------------------------------gtacgtgtcttcgtttgtattagggattttcctgattga-tggctgatcttaccttgtgttcttgtctgatgatattctgttgttgtggtccgta-------gGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTCTAAGGAGGTCGGATGGAACTACCATGACACCATCAGG------------

upper sequence: PP1S80_110V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G072315_T03 (Zea mays), 3'ss of exon 2
gtgagtctctcataatatttatgatctcacttggtaaagttaaagatggcgttctaagttatttgctttaagcatcaaattggtctgtactcctacagtgtaattccgtaactaagcagcacatgcgactttatatttcaacatagaagttctcaggtactaactttcatacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTCCGAGGAGGTTGGATGGCACCATTACGATACCATCAAAGAGTTGGAGGAG
                                                                              |   ||||    |  ||    | | || | | | | |   ||  ||   || || | ||      |     |  || | |  |    | | ||       |||| ||||||||||||||||||||||||| |||  |  | ||     | ||  ||||||| |||||| || |  | || |||||||  | |   |     
----------------------------------------------------------------------------gtacgtgtcttcgtttgtattagggattttcctgattga-tggctgatcttaccttgtgttcttgtctgatgatattctgttgttgtggtccgta-------gGGTCCTGAGGCTGCAACCTGGACACAAGTACTGCCTCCTTGGTGAGCTTTCTAAGGAGGTCGGATGGAACTACCATGACACCATCAGGGTGAGTGTTTCC

upper sequence: PP1S80_110V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT3G24830.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagtctctcataatatttatgatctcacttggtaaagttaaagatggcgttctaagttatttgctttaagcatcaaattggtctgtactcctacagtgtaattccgtaactaagcagcacatgcgactttatatttcaacatagaagttctcaggtactaactttcatacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTCCGAGGAGGTTGGATGGCACCATTACGATACCATCAAAGAGTTGGAGGAG
                                                                    |||   |        | |||    |||   |||||||  |    || |    |  ||    ||||  | |||||      ||| ||   |  |   |||  |  |     ||||  ||||||| ||  |||| ||||||| ||| |||||||| ||||||||    || ||||| ||| |||||||||||||||||||             
-------------------------------------------------------------------gtaatgtttctgcaactttgt---tctatcttgtaattttg--gttatgttcaatgtgt---tttagctgtcaact----ggttttcgtttgttttgttttgttta-----gGGTGTTGAGGCTTCAGGCTGGTCACAAGTACTGCTTGTTGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAG------------

upper sequence: PP1S80_110V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv07s0005g06490.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtctctcataatatttatgatctcacttggtaaagttaaagatggcgttctaagttatttgctttaagcatca-aattggtctgtactcctacagtgtaattccgtaactaagcagcacatgcgactttatatttcaacatagaagttctcaggtactaactttcatacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTCCGAGGAGGTTGGATGGCACCATTACGATACCATCAAAGAGTTGGAGGAG
                                 || |  ||   | |    ||     |  ||  || | |   ||  ||||||  | |  |   | ||| || ||   |   ||| ||     |   |  || | | |    |    | ||    | |  |   ||  |   |||  |||||  ||||||| ||  |||||||||||| ||| ||| | |||||  | |||   |||||||||||| |||||||||||||||||| |            
---------------------------------gttagtttcttgtttctcttgattatcgttgtctctgaatttcttaattggggtttggtttca-agtcta-ttgtttttttaatcatgtgttttaatcttgtttcttgctaattgattt----gatggttggttgaaataaaattagGGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTCCTCAGAGGTTGGATGGAACCATTACGATACCATCAGA------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18346037|gb|BJ178080.1|BJ178080
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCG
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCG
EST: gi|67576930|gb|BJ949754.1|BJ949754
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|18344723|gb|BJ176764.1|BJ176764
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|37830266|gb|BJ588278.1|BJ588278
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|18361020|gb|BJ193084.1|BJ193084
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|18350930|gb|BJ182981.1|BJ182981
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|162230875|gb|FC406714.1|FC406714
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|37823490|gb|BJ581556.1|BJ581556
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|67723375|gb|BJ973634.1|BJ973634
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|162269648|gb|FC444866.1|FC444866
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|37821925|gb|BJ579991.1|BJ579991
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|162269649|gb|FC444867.1|FC444867
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|67709300|gb|BJ965116.1|BJ965116
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|18343222|gb|BJ175260.1|BJ175260
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|67719275|gb|BJ969534.1|BJ969534
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|37822426|gb|BJ580492.1|BJ580492
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|37838910|gb|BJ596918.1|BJ596918
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|18344296|gb|BJ176336.1|BJ176336
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|37822078|gb|BJ580144.1|BJ580144
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|37823928|gb|BJ581994.1|BJ581994
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|18361497|gb|BJ193563.1|BJ193563
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCCGTTTGT
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCC-GTTTGT
EST: gi|18373955|gb|BJ205533.1|BJ205533
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTT
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTT
EST: gi|37824869|gb|BJ582935.1|BJ582935
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|67718710|gb|BJ968969.1|BJ968969
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|37825155|gb|BJ583221.1|BJ583221
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|162268068|gb|FC443538.1|FC443538
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|67574606|gb|BJ947430.1|BJ947430
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|67727577|gb|BJ977836.1|BJ977836
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|18330792|gb|BJ162798.1|BJ162798
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|67698024|gb|BJ958257.1|BJ958257
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|37830304|gb|BJ588316.1|BJ588316
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GNTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGNTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|37830473|gb|BJ588485.1|BJ588485
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|18339094|gb|BJ171120.1|BJ171120
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|18342779|gb|BJ174815.1|BJ174815
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|67700465|gb|BJ960698.1|BJ960698
EST:     ATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: ATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|162230018|gb|FC405958.1|FC405958
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|18341036|gb|BJ173069.1|BJ173069
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|15327091|gb|BI487568.1|BI487568
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|162230876|gb|FC406715.1|FC406715
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|37839204|gb|BJ597212.1|BJ597212
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
EST: gi|162268067|gb|FC443537.1|FC443537
EST:     CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAA                         GGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 81

CCAAGAGAGGAGCTGCTGCCCTTGAGCGCCTGAAGGCCTTCGAAGGAGTTCCTGCACCTTACGATAAGATGAAGAGGATGGTTATTCCGGACGCTCTCAAgtgagtctct ... tacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTCCGAGGAGGTTGGATGGCACCATTACGATACCATCAAAGAGTTGGAGGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgactttatatttcaacatagaagttctcaggtactaactttcatacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTCCGAGGAGGTTGGATGGCACCATTACGATACCATCAAAGAGTTGGAGGAG
                                 tactaac  putative branch site (score: 81)
                                       ctttcat  CT-rich tract
     tttatatttcaacata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtctctcataatatttatgatctcacttggtaaagttaaagatggcgttctaagttatttgctttaagcatcaaattggtctgtactcctacagtgtaattccgtaactaagcagcacatgcgactttatatttcaacatagaagttctcaggtactaactttcatacaaaacagGGTACTGAGGCTGCAACCTGGACACAAGTTCTGTTTGTTGGGCCGTTTGTCCGAGGAGGTTGGATGGCACCATTACGATACCATCAAAGAGTTGGAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
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