Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcgatatctctatggattttgtaagaattgaaggtagcatcattacttcgattgaaatcggcgtttagggaatcggtttaagaaaaccattgctaaacattgacttgggccgtacacagcagcaacacttattggacttcacttgttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGGCAAGCTTAACAAGAGCCGCACTGCCTTGACCGACAACAGCATCATTGAG

Basic information

species Physcomitrella patens
transcript PP1S7_369V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162202963|gb|FC380348.1|FC380348
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162206138|gb|FC383131.1|FC383131
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|67710007|gb|BJ965816.1|BJ965816
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162217475|gb|FC393151.1|FC393151
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|7147639|gb|AW509561.1|AW509561
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162268134|gb|FC443812.1|FC443812
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162276099|gb|FC452375.1|FC452375
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|22132107|gb|BQ826984.1|BQ826984
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|19789428|gb|BQ041303.1|BQ041303
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCCTACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|22492332|gb|BU052255.1|BU052255
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|67716289|gb|BJ966549.1|BJ966549
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162192487|gb|FC368623.1|FC368623
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162261536|gb|FC437553.1|FC437553
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|18335591|gb|BJ167611.1|BJ167611
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162230958|gb|FC407213.1|FC407213
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|67693912|gb|BJ954145.1|BJ954145
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162219897|gb|FC396712.1|FC396712
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTAATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|18343052|gb|BJ175089.1|BJ175089
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|18335238|gb|BJ167256.1|BJ167256
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162268133|gb|FC443811.1|FC443811
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|67570505|gb|BJ943329.1|BJ943329
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|67724079|gb|BJ974338.1|BJ974338
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162266141|gb|FC441890.1|FC441890
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162206137|gb|FC383130.1|FC383130
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|67692997|gb|BJ953230.1|BJ953230
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162227557|gb|FC403499.1|FC403499
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162215743|gb|FC391744.1|FC391744
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162217474|gb|FC393150.1|FC393150
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|67720876|gb|BJ971135.1|BJ971135
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|18327318|gb|BJ159320.1|BJ159320
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162254771|gb|FC431060.1|FC431060
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162266140|gb|FC441889.1|FC441889
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|18337941|gb|BJ169965.1|BJ169965
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|67569731|gb|BJ942555.1|BJ942555
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162230957|gb|FC407212.1|FC407212
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|15727544|gb|BI740344.1|BI740344
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|7207256|gb|AW561259.1|AW561259
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACTG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|67693788|gb|BJ954021.1|BJ954021
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|67720498|gb|BJ970757.1|BJ970757
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|18372920|gb|BJ204522.1|BJ204522
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCCGGGAGTTGATCTACAAGCGTGGTTACG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCC-GGGAGTTGATCTACAAGCGTGGTTACG
EST: gi|162261535|gb|FC437552.1|FC437552
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162202964|gb|FC380349.1|FC380349
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162215742|gb|FC391743.1|FC391743
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|37843436|gb|BJ601444.1|BJ601444
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|67570628|gb|BJ943452.1|BJ943452
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|162219896|gb|FC396711.1|FC396711
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTAATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|19787357|gb|BQ040606.1|BQ040606
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
EST: gi|37822200|gb|BJ580266.1|BJ580266
EST:     AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGG                         GTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG
genomic: AAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 98

AACTGTTGAGGCTGAGGCAGATCTTCAATGGCGTATTCATGAAGGTGAACAAGGCTACCGTGAACATGTTGCGCAGGGTTGAGCCATACGTCACTTATGGgtgagttcga ... ttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGGCAAGCTTAACAAGAGCCGCACTGCCTTGACCGACAACAGCATCATTGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacttgggccgtacacagcagcaacacttattggacttcacttgttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGGCAAGCTTAACAAGAGCCGCACTGCCTTGACCGACAACAGCATCATTGAG
 cattgac  putative branch site (score: 98)
                                         cttgtttt  putative PPT
                                          ttgttttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttcgatatctctatggattttgtaagaattgaaggtagcatcattacttcgattgaaatcggcgtttagggaatcggtttaagaaaaccattgctaaacattgacttgggccgtacacagcagcaacacttattggacttcacttgttttattcagGTATCCCAACTTGAAAACTGTCCGGGAGTTGATCTACAAGCGTGGTTACGGCAAGCTTAACAAGAGCCGCACTGCCTTGACCGACAACAGCATCATTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT