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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtctacgttaggagaacttttaattcggttttctgtcaaccagttcagagcattggtgagaatgtatcaattatgcatttattttagtaatgctgttctcgaacatctttctgatgttgactatgtgcagCATTTGCAACCATTACTAAGGATGTATGCAAACTACCGTCCTTCTTCTCCATGGCTTTATTCAAAAAGATTGACATCAATAATACAGGCTTGGTTACAAG

Basic information

species Physcomitrella patens
transcript PP1S7_163V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208370610|gb|DC932643.1|DC932643
EST:     TCGCGTAAACCAAATATTCGGAGCTCATCCANAANGTTTACCTGCATCAN                         CATTTGCAACCATTACTAAGGATGTATGCAAACTACNGTCCTTCT
genomic: TCGCGTAAACCAAATATTCGGAGCTCATCCAGAAGGTTTACCTGCATCAGgtcagtctac ... ctatgtgcagCATTTGCAACCATTACTAAGGATGTATGCAAACTACCGTCCTTCT
EST: gi|100391742|gb|BY989530.1|BY989530
EST:     TCGCGTAAACCAAATATTCGGAGCTCATCCAGAAGGTTTACCTGCATCAG                         CATTTGCAACCATTACTAAGGATGTATGCAAACTACC
genomic: TCGCGTAAACCAAATATTCGGAGCTCATCCAGAAGGTTTACCTGCATCAGgtcagtctac ... ctatgtgcagCATTTGCAACCATTACTAAGGATGTATGCAAACTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttattttagtaatgctgttctcgaacatctttctgatgttgactatgtgcagCATTTGCAACCATTACTAAGGATGTATGCAAACTACCGTCCTTCTTCTCCATGGCTTTATTCAAAAAGATTGACATCAATAATACAGGCTTGGTTACAAG
                                       tgttgac  putative branch site (score: 3)
 attttagtaat  TA-rich tract