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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttccgttcactctctgtcggaaaattcagaggtttttgtgaaattggttggatgacatttacatgcgtttgtagcacgagtgttcatgtgacacatgaagactgaaaaagatactggaatcttatgataataattgcgttgaacggtggctaaaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG

Basic information

species Physcomitrella patens
transcript PP1S7_156V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67575552|gb|BJ948376.1|BJ948376
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100446463|gb|CJ970762.1|CJ970762
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208390242|gb|DC942007.1|DC942007
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|18370458|gb|BJ202060.1|BJ202060
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100402225|gb|BY973279.1|BY973279
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|162223608|gb|FC399420.1|FC399420
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100449226|gb|CJ973525.1|CJ973525
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100450295|gb|CJ974191.1|CJ974191
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100353250|gb|BY964711.1|BY964711
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|67716523|gb|BJ966783.1|BJ966783
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|162270682|gb|FC446295.1|FC446295
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208357950|gb|DC943062.1|DC943062
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100412106|gb|BY956417.1|BY956417
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208354657|gb|DC934301.1|DC934301
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208360044|gb|DC934933.1|DC934933
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|162274023|gb|FC450370.1|FC450370
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100421795|gb|BY993647.1|BY993647
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208363910|gb|DC939559.1|DC939559
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100424973|gb|BY976908.1|BY976908
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208352142|gb|DC906273.1|DC906273
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|18361927|gb|BJ193994.1|BJ193994
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100392847|gb|BY971911.1|BY971911
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGAAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100447685|gb|CJ971984.1|CJ971984
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100383551|gb|BY950335.1|BY950335
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100388158|gb|BY988631.1|BY988631
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100437573|gb|BY979720.1|BY979720
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208390935|gb|DC942239.1|DC942239
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208361725|gb|DC934965.1|DC934965
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100391526|gb|BY971701.1|BY971701
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100405539|gb|BY973727.1|BY973727
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208346716|gb|DC913362.1|DC913362
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|67716406|gb|BJ966666.1|BJ966666
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208375943|gb|DC914410.1|DC914410
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100386816|gb|BY988085.1|BY988085
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208391473|gb|DC937621.1|DC937621
EST:     TCGTCGTGAANCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208372285|gb|DC936443.1|DC936443
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208353244|gb|DC913918.1|DC913918
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100448570|gb|CJ972869.1|CJ972869
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208393881|gb|DC938464.1|DC938464
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208358324|gb|DC930709.1|DC930709
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|67578178|gb|BJ950345.1|BJ950345
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|18366063|gb|BJ198141.1|BJ198141
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100420571|gb|BY976074.1|BY976074
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100384726|gb|BY950716.1|BY950716
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100360822|gb|BY965918.1|BY965918
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|67704574|gb|BJ964807.1|BJ964807
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|162203673|gb|FC378548.1|FC378548
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100383470|gb|BY950254.1|BY950254
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208386794|gb|DC937186.1|DC937186
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100405432|gb|BY955522.1|BY955522
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCCCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|18331338|gb|BJ163348.1|BJ163348
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208391423|gb|DC937571.1|DC937571
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208366691|gb|DC931348.1|DC931348
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|67508690|gb|BJ941551.1|BJ941551
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208355278|gb|DC929767.1|DC929767
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|208355422|gb|DC929841.1|DC929841
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
EST: gi|100355867|gb|BY946078.1|BY946078
EST:     TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTG                         GTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT
genomic: TCGTCGTGAAGCCAGATATGTTGTTCGGCAAGCGAGGAAAGAGTGGCTTGgtaggttccg ... aaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagatactggaatcttatgataataattgcgttgaacggtggctaaaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG
                                        ggctaaa  putative branch site (score: 3)
          aatcttatgataataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggttccgttcactctctgtcggaaaattcagaggtttttgtgaaattggttggatgacatttacatgcgtttgtagcacgagtgttcatgtgacacatgaagactgaaaaagatactggaatcttatgataataattgcgttgaacggtggctaaaatctgcagGTGGCTCTCAACTTAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG