1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtggtgcatctccagggtcctgtgactctttgttgcattgcaatgtgtgctcggatactggcttttaggtttcataatgttgtggttttttgtgcattaggtttctttcagggaggtatgatttgcttgcatcttgatcattcctgcattctaggaaactgaaatgggttggtgttatgtgttgcatagGTGATAAATTCAATTCGGTTGTTGAATTTCCCTGGACAAATGTGGTGGACGAGAAAAAG
species | Physcomitrella patens |
transcript | PP1S79_62V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGGCTTTGAACGATTATTTACCTCTATTGCTGGGTCTCGTCATAGGAA GTGATAAATTCAAATCGGTTGTTGAATTTCCCTGGACAAATGTGGTGAACGEST: gi|162158002|gb|FC334429.1|FC334429
genomic: GAAGGCTTTGAACGATTATTTACCTCTATTGCTGGGTCTCGTCATAGGAGgtggtgcatc ... tgttgcatagGTGATAAATTCAATTCGGTTGTTGAATTTCCCTGGACAAATGTGGTGGACG
EST: GAAGGCTTTGAACGATTATTTACCTCTATTGCTGGGTCTCGTCATAGGAG GTGATAAATTCAATTCGGTTGTTGAATTTCCCTGGACAAATGTGGTGGACG
genomic: GAAGGCTTTGAACGATTATTTACCTCTATTGCTGGGTCTCGTCATAGGAGgtggtgcatc ... tgttgcatagGTGATAAATTCAATTCGGTTGTTGAATTTCCCTGGACAAATGTGGTGGACG
tgatcattcctgcattctaggaaactgaaatgggttggtgttatgtgttgcatagGTGATAAATTCAATTCGGTTGTTGAATTTCCCTGGACAAATGTGGTGGACGAGAAAAAG
tcttgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtgcatctccagggtcctgtgactctttgttgcattgcaatgtgtgctcggatactggcttttaggtttcataatgttgtggttttttgtgcattaggtttctttcagggaggtatgatttgcttgcatcttgatcattcctgcattctaggaaactgaaatgggttggtgttatgtgttgcatagGTGATAAATTCAATTCGGTTGTTGAATTTCCCTGGACAAATGTGGTGGACGAGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA