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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatggtcttgcctactaaaaccttcttcatattgactttttgcaaatctttgagttgcaggttattcttcttttgcaggccgtgcttacttttcatatgttgtgatttccatcaactactaggttggatatcagtactgactttggctttaaggttgtctcagGCGATTGCAGTAGCTTTGCGGTACCGACAGCCATTCTTCGTGATGTTGGAGGCATTGTTATCAGCCAACAAAGACTTTATTGATCGCATGCTTATCAATC

Basic information

species Physcomitrella patens
transcript PP1S79_213V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162202399|gb|FC379186.1|FC379186
EST:     TGGATGAGAGAACGGGGGTGAGGTCTGTAGTGGCTTCCACATTTCCGCAG                         GCGATTGCAGTAGCTTTGCGGTACCGACAGCCATTCTTCGTGATGTTGGAG
genomic: TGGATGAGAGAACGGGGGTGAGGTCTGTAGTGGCTTCCACATTTCCGCAGgtgatggtct ... gttgtctcagGCGATTGCAGTAGCTTTGCGGTACCGACAGCCATTCTTCGTGATGTTGGAG
EST: gi|162167008|gb|FC342470.1|FC342470
EST:     TGGATGAGAGAACGGGGGTGAGGTCTGTAGTGGCTTCCACATTTCCGCAG                         GCGATTGCAGTAGCTTTGCGGTACCGACAGCCATTCTTCGTGATGTTGGAG
genomic: TGGATGAGAGAACGGGGGTGAGGTCTGTAGTGGCTTCCACATTTCCGCAGgtgatggtct ... gttgtctcagGCGATTGCAGTAGCTTTGCGGTACCGACAGCCATTCTTCGTGATGTTGGAG
EST: gi|162202398|gb|FC379185.1|FC379185
EST:     TGGATGAGAGAACGGGGGTGAGGTCTGTAGTGGCTTCCACATTTCCGCAG                         GCGATTGCAGTAGCTTTGCGGTACCGACAGCCATTTTTCGTGATGTTGGAG
genomic: TGGATGAGAGAACGGGGGTGAGGTCTGTAGTGGCTTCCACATTTCCGCAGgtgatggtct ... gttgtctcagGCGATTGCAGTAGCTTTGCGGTACCGACAGCCATTCTTCGTGATGTTGGAG
EST: gi|208349125|gb|DC925908.1|DC925908
EST:     TGGATGAGAGAACGGGGGTGAGGTCTGTAGTGGCTTCCACATTTCCGCAG                         GCGATTGCAGTAGCTTTGCGGTACCGACAGCCATTCTTCGTGATGTTGGAG
genomic: TGGATGAGAGAACGGGGGTGAGGTCTGTAGTGGCTTCCACATTTCCGCAGgtgatggtct ... gttgtctcagGCGATTGCAGTAGCTTTGCGGTACCGACAGCCATTCTTCGTGATGTTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatcaactactaggttggatatcagtactgactttggctttaaggttgtctcagGCGATTGCAGTAGCTTTGCGGTACCGACAGCCATTCTTCGTGATGTTGGAGGCATTGTTATCAGCCAACAAAGACTTTATTGATCGCATGCTTATCAATC
                          tactgac  putative branch site (score: 1)
                                              ttgtctc  putative PPT
                                       tttaa  TA-rich tract