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gtgcttacccgatcaacatacaccaacaatgccctaagttccgaagttttattctattctgttgcggagctcgtttaatgctgacctccatggtcttatttatgtgcacgtgaacgacttagaagtaactatcctctaatgagtgtgtcccttttttggtggaggatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTATTGCCAACTCCAACGTAATTGTGAACTGCATTG
species | Physcomitrella patens |
transcript | PP1S79_105V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|208383362|gb|DC907537.1|DC907537
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|100381811|gb|BY950184.1|BY950184
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|162256292|gb|FC432198.1|FC432198
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|67507649|gb|BJ940529.1|BJ940529
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|162259819|gb|FC435954.1|FC435954
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|100440199|gb|BY980445.1|BY980445
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTTGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|100364138|gb|BY966734.1|BY966734
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|162276087|gb|FC452363.1|FC452363
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|67577930|gb|BJ950097.1|BJ950097
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|18362228|gb|BJ194298.1|BJ194298
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|18365271|gb|BJ197345.1|BJ197345
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|18366348|gb|BJ198427.1|BJ198427
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|100427489|gb|BY977523.1|BY977523
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|100374683|gb|BY949018.1|BY949018
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|100387000|gb|BY951399.1|BY951399
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCANAGCAGCTEST: gi|100448979|gb|CJ973278.1|CJ973278
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCNGGGATGAGGACTCTATCAAAGCAGCTEST: gi|100400631|gb|BY972916.1|BY972916
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTEST: gi|208393451|gb|DC942521.1|DC942521
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
EST: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAG ATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
genomic: GTTTGGACGAAGAATGGAGGCATCTTAAGCTCATGGGAGACCTCGGACAGgtgcttaccc ... gatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCT
tagaagtaactatcctctaatgagtgtgtcccttttttggtggaggatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTATTGCCAACTCCAACGTAATTGTGAACTGCATTG
atttatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttacccgatcaacatacaccaacaatgccctaagttccgaagttttattctattctgttgcggagctcgtttaatgctgacctccatggtcttatttatgtgcacgtgaacgacttagaagtaactatcctctaatgagtgtgtcccttttttggtggaggatttatcagATTGTGCCCATAAAGTATGACGCCAGGGATGAGGACTCTATCAAAGCAGCTATTGCCAACTCCAACGTAATTGTGAACTGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT