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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatgtgcatgcaggggcaccacaactgtctgagtccatgatctctgctttcatcgatcatttcttcttctcacttagaaaattcgtttcgaacttgcagACGGAGGCTTAACCCCCTCGTTCAACGAAAAATTTGTGGTAAAACTAATCGAAGGTTTGCGAGAACTTTCTGCTACCGTCTGGAATAGCAATACACTTTC

Basic information

species Physcomitrella patens
transcript PP1S78_70V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100418032|gb|BY993303.1|BY993303
EST:     CGTTCACCTCGAGTATGGGTCCACTAAGCACCGCACACGGACTGACACAG                         ACGGAGGCTTAACCCCCTCGTTCAACGAAAAATTTGTGGTAAAACTAATCG
genomic: CGTTCACCTCGAGTATGGGTCCACTAAGCACCGCACACGGACTGACACAGgtttcgctgc ... gaacttgcagACGGAGGCTTAACCCCCTCGTTCAACGAAAAATTTGTGGTAAAACTAATCG
EST: gi|162235840|gb|FC412391.1|FC412391
EST:     CGTTCACCTCGAGTATGGGTCCACTAAGCACCGCACACGGACTGACACAG                         ACGGAGGCTTAACCCCCTCGTTCAACGAAAAATTTGTGGTAAAACTAATCG
genomic: CGTTCACCTCGAGTATGGGTCCACTAAGCACCGCACACGGACTGACACAGgtttcgctgc ... gaacttgcagACGGAGGCTTAACCCCCTCGTTCAACGAAAAATTTGTGGTAAAACTAATCG
EST: gi|67577778|gb|BJ949945.1|BJ949945
EST:     CGTTCACCTCGAGTATGGGTCCACTAAGCACCGCACACGGACTGACACAG                         ACGGAGGCTTAACCCCCTCGTTCAACGAAAAATTTGTGGTAAAACTAATCG
genomic: CGTTCACCTCGAGTATGGGTCCACTAAGCACCGCACACGGACTGACACAGgtttcgctgc ... gaacttgcagACGGAGGCTTAACCCCCTCGTTCAACGAAAAATTTGTGGTAAAACTAATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttcatcgatcatttcttcttctcacttagaaaattcgtttcgaacttgcagACGGAGGCTTAACCCCCTCGTTCAACGAAAAATTTGTGGTAAAACTAATCGAAGGTTTGCGAGAACTTTCTGCTACCGTCTGGAATAGCAATACACTTTC
                      ttctcac  putative branch site (score: 2)
                             ttagaaaatt  TA-rich tract