1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgcacatgaagatcaagagaaaatacctttcttggaatgtgtgatcgacggtgcatctgtttctgcatgtccaattctgctaagaaaattcttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGAC
species | Physcomitrella patens |
transcript | PP1S78_4V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATEST: gi|162268669|gb|FC445166.1|FC445166
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATEST: gi|67571995|gb|BJ944819.1|BJ944819
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATEST: gi|100360013|gb|BY965985.1|BY965985
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATEST: gi|100399488|gb|BY972744.1|BY972744
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: CATCTTGGTATATGCCCAATGAAAACCGCA-CACACTTGAAGACTACNAG GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGGACA-GATTTCCGAEST: gi|100418022|gb|BY993298.1|BY993298
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCG-ACAAGATTTCCGA
EST: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACNAG GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATEST: gi|100412842|gb|BY992463.1|BY992463
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATEST: gi|100396273|gb|BY990048.1|BY990048
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATEST: gi|208376166|gb|DC906797.1|DC906797
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATEST: gi|100374119|gb|BY985671.1|BY985671
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG GAAGAGCACATTCCTGGAGCAGEST: gi|67716419|gb|BJ966679.1|BJ966679
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAG
EST: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACNAGATTTCCGATEST: gi|208360175|gb|DC939186.1|DC939186
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATEST: gi|100411082|gb|BY956316.1|BY956316
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: ATCTTGGTATATGCCCAATGAAAACCGCAACACACTTTGA-GACTACAAG GGAGAGCACATTTCTTGGAGCAGTTTTCTGTGACTTCGACAAGATTTCCGAEST: gi|162182755|gb|FC359502.1|FC359502
genomic: ATCTTGGTATATGCCCAATGAAAACCGCAACACACTT-GAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCT-GGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGA
EST: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
cgacggtgcatctgtttctgcatgtccaattctgctaagaaaattcttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGAC
ttcttcttac CT-rich tract
taagaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcacatgaagatcaagagaaaatacctttcttggaatgtgtgatcgacggtgcatctgtttctgcatgtccaattctgctaagaaaattcttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG