1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaccttcgaacatatccttttcaactatgtgataagctatctacgtcaattttctggacatctaacgttaaattcttaaaaactgctacctgatggtgttttactcctttctcttgagctggatacatgtatatgaagtcgtgactaaataattataacccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAAAGAAGCCAACTGATAAATACATTCAGGTGGTGACGACAGATGGACATG
species | Physcomitrella patens |
transcript | PP1S78_27V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|162251814|gb|FC427546.1|FC427546
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|162271809|gb|FC448942.1|FC448942
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|37842263|gb|BJ600271.1|BJ600271
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: TTGACGTACTATCCCCACCCCTGGCCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|162242692|gb|FC416383.1|FC416383
genomic: TTGACGTACTAT-CCCACCCCTGG-CCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|208374673|gb|DC948645.1|DC948645
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|208382718|gb|DC928479.1|DC928479
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: CTCCAGTTA-TAC-AN GNTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGNTGCGAACGCAEST: gi|162258231|gb|FC434630.1|FC434630
genomic: CTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|208384438|gb|DC928189.1|DC928189
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|162271808|gb|FC448941.1|FC448941
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|208384413|gb|DC928164.1|DC928164
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|67694428|gb|BJ954661.1|BJ954661
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|208385225|gb|DC923591.1|DC923591
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGACGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|208355239|gb|DC949789.1|DC949789
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|208374197|gb|DC945243.1|DC945243
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|208353654|gb|DC922128.1|DC922128
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|208362981|gb|DC946892.1|DC946892
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|37828136|gb|BJ586148.1|BJ586148
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|37825984|gb|BJ584050.1|BJ584050
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: GGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|208352534|gb|DC918243.1|DC918243
genomic: GGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTANCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|162272036|gb|FC448454.1|FC448454
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|208381635|gb|DC915501.1|DC915501
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|208346585|gb|DC916851.1|DC916851
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|37852720|gb|BJ610728.1|BJ610728
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: CCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|208350120|gb|DC921487.1|DC921487
genomic: CCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|37835053|gb|BJ593065.1|BJ593065
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: CTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|37844181|gb|BJ602189.1|BJ602189
genomic: CTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: CCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|67726088|gb|BJ976347.1|BJ976347
genomic: CCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|18338051|gb|BJ170075.1|BJ170075
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|37828148|gb|BJ586160.1|BJ586160
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: TTGACGTACTATCCCCACCCCTGGCCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|37828990|gb|BJ587002.1|BJ587002
genomic: TTGACGTACTAT-CCCACCCCTGG-CCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAEST: gi|208372211|gb|DC948014.1|DC948014
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
tgagctggatacatgtatatgaagtcgtgactaaataattataacccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAAAGAAGCCAACTGATAAATACATTCAGGTGGTGACGACAGATGGACATG
ttataac putative branch site (score: 2)
cccatcc CT-rich tract
tgactaaataattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccttcgaacatatccttttcaactatgtgataagctatctacgtcaattttctggacatctaacgttaaattcttaaaaactgctacctgatggtgttttactcctttctcttgagctggatacatgtatatgaagtcgtgactaaataattataacccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAAAGAAGCCAACTGATAAATACATTCAGGTGGTGACGACAGATGGACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA