1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtattgtcattagtctgttctgtccaaaatgattttgcaggagtttttggacttggatttgcaatttctagtgcgttttattgattccgtttgtttgggatcacctccatttgtttgcttgcgaaagcataataagtatcgacagccacattcgttattttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACGAAGCAGGGAAAGAGCCCTTCGTTGAGCAGCCTACTATTATCGAGGAGG
species | Physcomitrella patens |
transcript | PP1S77_163V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACEST: gi|162251970|gb|FC426675.1|FC426675
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACEST: gi|15327009|gb|BI487464.1|BI487464
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACEST: gi|162239911|gb|FC415750.1|FC415750
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACEST: gi|18360619|gb|BJ192682.1|BJ192682
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTEST: gi|208382112|gb|DC914787.1|DC914787
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTT
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACEST: gi|162239910|gb|FC415749.1|FC415749
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACEST: gi|18327068|gb|BJ159069.1|BJ159069
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACEST: gi|100396568|gb|BY990190.1|BY990190
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGTGCTTGAGGCTTTAGAGCGTGATTACEST: gi|100412337|gb|BY956532.1|BY956532
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAAGAGT-GAAGCGCTTGAGGCTTTAGAGCGTGATTAEST: gi|67692379|gb|BJ952612.1|BJ952612
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAA-GAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTA
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACEST: gi|162251969|gb|FC426674.1|FC426674
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: GATGCACCCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACEST: gi|67569137|gb|BJ941961.1|BJ941961
genomic: GATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACEST: gi|162214635|gb|FC390666.1|FC390666
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACEST: gi|100372283|gb|BY985523.1|BY985523
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAEST: gi|18335032|gb|BJ167050.1|BJ167050
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTA
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACEST: gi|162253434|gb|FC430068.1|FC430068
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: TTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACEST: gi|208392848|gb|DC928534.1|DC928534
genomic: TTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: CCGTGGTGT-GTGGTCTGATGCANCC-AAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAG-TGAAGCGCTTGAGGC-TTAGAGCGTGATTACEST: gi|162253435|gb|FC430069.1|FC430069
genomic: CCGTGGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
EST: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG AAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
genomic: GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGgtattgtcat ... ttttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTAC
gtttgcttgcgaaagcataataagtatcgacagccacattcgttattttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACGAAGCAGGGAAAGAGCCCTTCGTTGAGCAGCCTACTATTATCGAGGAGG
ttcgttattttcttc CT-rich tract
ataataagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtcattagtctgttctgtccaaaatgattttgcaggagtttttggacttggatttgcaatttctagtgcgttttattgattccgtttgtttgggatcacctccatttgtttgcttgcgaaagcataataagtatcgacagccacattcgttattttcttcagAAAGCTCATTTACGAAGAGTTGAAGCGCTTGAGGCTTTAGAGCGTGATTACGAAGCAGGGAAAGAGCCCTTCGTTGAGCAGCCTACTATTATCGAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG