1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gagctcagatatggagctaattgcttccagtttttcgtggaagtgaatgaatgtattgaatagttgattagactctgggaatggcaattgtgcgttgcagTTGGTGGGACTGAAGAAGCTGGATTTGAAGGTGGGCATGTGTTGCATGAAATGCGCGGAGATTATTTCGGAAGAAATCAGAGAAGTACCTG
species | Physcomitrella patens |
transcript | PP1S77_115V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAATTCTTGGTATGCCCCAGTTAAAGTTGCCCCTGCTGAGACAATGCCG TTGGTGGGACTGAAGAAGCTGGATTTGAAGGTGGGCATGTGTTGCATGAAAEST: gi|100386106|gb|BY970045.1|BY970045
genomic: GCAATTCTTGGTATGCCCCAGTTAAAGTTGCCCCTGCTGAGACAATGCCGgtatgtcttc ... tgcgttgcagTTGGTGGGACTGAAGAAGCTGGATTTGAAGGTGGGCATGTGTTGCATGAAA
EST: GCAATTCTTGGTATGCCCCAGTTAAAGTTGCCCCTGCTGAGACAATGCCG TTGGTGGGACTGAAGAAGCTGGATTTGAAGGTGGGCATGTGTTGCATGAAA
genomic: GCAATTCTTGGTATGCCCCAGTTAAAGTTGCCCCTGCTGAGACAATGCCGgtatgtcttc ... tgcgttgcagTTGGTGGGACTGAAGAAGCTGGATTTGAAGGTGGGCATGTGTTGCATGAAA
aatgaatgtattgaatagttgattagactctgggaatggcaattgtgcgttgcagTTGGTGGGACTGAAGAAGCTGGATTTGAAGGTGGGCATGTGTTGCATGAAATGCGCGGAGATTATTTCGGAAGAAATCAGAGAAGTACCTG
agttgat putative branch site (score: 10)
tattgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagctcagatatggagctaattgcttccagtttttcgtggaagtgaatgaatgtattgaatagttgattagactctgggaatggcaattgtgcgttgcagTTGGTGGGACTGAAGAAGCTGGATTTGAAGGTGGGCATGTGTTGCATGAAATGCGCGGAGATTATTTCGGAAGAAATCAGAGAAGTACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT