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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctggacagtagctgggcaagcaagagattgcagttccaaggaggggaggggtagtccatgcagggaagtatctccgaagcgctgtgcctgattgaccttatttgctgactattgctgcagGTTTCGAAGATGCCTTGACACCTTGTTGCACGGGGATTAACGATTCCTACGTGCTCAATTGCGGCCATACAGACAGCGAGGGACGCCCTCTGTACAAGGT

Basic information

species Physcomitrella patens
transcript PP1S77_105V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37827546|gb|BJ585558.1|BJ585558
EST:     GAACCAAACCAAGGCTTTCGAACACATCTTCCACCACGGATCCCAATACG                         GTTTCGAAGATGCCTTGACACCTTGTTGCACGGGGATTAACGATTCCTACG
genomic: GAACCAAACCAAGGCTTTCGAACACATCTTCCACCACGGATCCCAATACGgtacgctgga ... attgctgcagGTTTCGAAGATGCCTTGACACCTTGTTGCACGGGGATTAACGATTCCTACG
EST: gi|208354220|gb|DC957426.1|DC957426
EST:     GAACCAAACCAAGGCTTTCGAACACATCTTCCACCACGGATCCCAATACG                         GTTTCGAAGATGCCTTGACACCTTGTTGCACGGGGATTAACGATTCNTACG
genomic: GAACCAAACCAAGGCTTTCGAACACATCTTCCACCACGGATCCCAATACGgtacgctgga ... attgctgcagGTTTCGAAGATGCCTTGACACCTTGTTGCACGGGGATTAACGATTCCTACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtatctccgaagcgctgtgcctgattgaccttatttgctgactattgctgcagGTTTCGAAGATGCCTTGACACCTTGTTGCACGGGGATTAACGATTCCTACGTGCTCAATTGCGGCCATACAGACAGCGAGGGACGCCCTCTGTACAAGGT
                                     tgctgac  putative branch site (score: 2)
                                ttattt  TA-rich tract