1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgctgttcgtgattccagaagacaccagattatgttagctccattttatcttcgctttaaatttagagaatgctgttttatgaagctcattaaagcatgaaagtaaatgtcttcattttttctaactgtatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCAAGGCAGCCGGTTGGGGTGTTATGGTCAGCCACCGAAGTGGAGAGACTG
species | Physcomitrella patens |
transcript | PP1S76_97V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAGATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|67693606|gb|BJ953839.1|BJ953839
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|208367450|gb|DC943909.1|DC943909
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|18332690|gb|BJ164703.1|BJ164703
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: TATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|67570333|gb|BJ943157.1|BJ943157
genomic: TATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|208364752|gb|DC943626.1|DC943626
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|67725691|gb|BJ975950.1|BJ975950
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|67727971|gb|BJ978230.1|BJ978230
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|208374157|gb|DC945203.1|DC945203
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAATTTCTGAGGCTATCTCAAAGCAAGTCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|37839773|gb|BJ597781.1|BJ597781
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: CTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|67698210|gb|BJ958443.1|BJ958443
genomic: CTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|208371256|gb|DC944420.1|DC944420
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|208386286|gb|DC952999.1|DC952999
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAANTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|208366457|gb|DC955570.1|DC955570
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|208347383|gb|DC925351.1|DC925351
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|208361853|gb|DC950125.1|DC950125
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|67697196|gb|BJ957429.1|BJ957429
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCEST: gi|208368997|gb|DC955082.1|DC955082
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
EST: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAG GTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
genomic: AAATTTCTGAGGCTATCTCAAAGCAAGCCTGCAACGCTCTGTTGTTGAAGgtatgctgtt ... tatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCC
agctcattaaagcatgaaagtaaatgtcttcattttttctaactgtatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCAAGGCAGCCGGTTGGGGTGTTATGGTCAGCCACCGAAGTGGAGAGACTG
ttctaac putative branch site (score: 6)
ttcattttttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctgttcgtgattccagaagacaccagattatgttagctccattttatcttcgctttaaatttagagaatgctgttttatgaagctcattaaagcatgaaagtaaatgtcttcattttttctaactgtatcgcgcagGTAAATCAAATCGGGTCTGTAACGGAGTCCATTCAAGCTGCCCTGGATTCCAAGGCAGCCGGTTGGGGTGTTATGGTCAGCCACCGAAGTGGAGAGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA