1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtaaagtttccatgttgcaatattattttgtataggaaattgttatcactacaaatgcttacatagaattataaatcatcgattattattattattgatttgattgataagaaggggggataaattgtggaacgtgcagAGGTTATATGGCACCAGAGTATGCTTCTCTTGGCCAAATAAGTGAAAGAGTAGACGTCTTCAGTTTTGGAGTGTTGGCCTTGGAGGTTGTGAGTGGGAGG
species | Physcomitrella patens |
transcript | PP1S76_92V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTCCAAATCAAGAGACCCATATTACAATTGAGCAAATTGCCGGTACATA AGGTTATATGGCACCAGAGTATGCTTCTCTTGGCCAAATAAGTGAAAGAGTEST: gi|162195919|gb|FC375652.1|FC375652
genomic: TTTCCAAATCAAGAGACCCATATTACAATTGAGCAAATTGCCGGTACAAAgtaagtaaag ... gaacgtgcagAGGTTATATGGCACCAGAGTATGCTTCTCTTGGCCAAATAAGTGAAAGAGT
EST: TTTCCAAATCAAGAGACCCATATTACAATTGAGCAAATTGCCGGTACAAA AGGTTATATGGCACCAGAGTATGCTTCTCTTGGCCAAATAAGTGAAAGAGTEST: gi|37851564|gb|BJ609572.1|BJ609572
genomic: TTTCCAAATCAAGAGACCCATATTACAATTGAGCAAATTGCCGGTACAAAgtaagtaaag ... gaacgtgcagAGGTTATATGGCACCAGAGTATGCTTCTCTTGGCCAAATAAGTGAAAGAGT
EST: TTTCCAAATCAAGAGACCCATATTACAATTGAGCAAATTGCCGGTACAAA AGGTTATATGGCACCAGAGTATGCTTCTCTTGGCCAAATAAGTGAAAGAGTEST: gi|37836695|gb|BJ594703.1|BJ594703
genomic: TTTCCAAATCAAGAGACCCATATTACAATTGAGCAAATTGCCGGTACAAAgtaagtaaag ... gaacgtgcagAGGTTATATGGCACCAGAGTATGCTTCTCTTGGCCAAATAAGTGAAAGAGT
EST: ATTGAGCAAATTGCCGGTACAAA AGGTTATATGGCACCAGAGTATGCTTCTCTTGGCCAAATAAGTGAAAGAGTEST: gi|37848350|gb|BJ606358.1|BJ606358
genomic: ATTGAGCAAATTGCCGGTACAAAgtaagtaaag ... gaacgtgcagAGGTTATATGGCACCAGAGTATGCTTCTCTTGGCCAAATAAGTGAAAGAGT
EST: AATTGAGCAAATTGCCGGTACAAA AGGTTATATGNCACCAGAGTATGCTTCTCTTGNCCAAATAAGTGAAAGAGT
genomic: AATTGAGCAAATTGCCGGTACAAAgtaagtaaag ... gaacgtgcagAGGTTATATGGCACCAGAGTATGCTTCTCTTGGCCAAATAAGTGAAAGAGT
attattattattgatttgattgataagaaggggggataaattgtggaacgtgcagAGGTTATATGGCACCAGAGTATGCTTCTCTTGGCCAAATAAGTGAAAGAGTAGACGTCTTCAGTTTTGGAGTGTTGGCCTTGGAGGTTGTGAGTGGGAGG
tattattgatttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaagtttccatgttgcaatattattttgtataggaaattgttatcactacaaatgcttacatagaattataaatcatcgattattattattattgatttgattgataagaaggggggataaattgtggaacgtgcagAGGTTATATGGCACCAGAGTATGCTTCTCTTGGCCAAATAAGTGAAAGAGTAGACGTCTTCAGTTTTGGAGTGTTGGCCTTGGAGGTTGTGAGTGGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG