1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...actccaactgctgcgacatgatcagtattttgtgcttgtaaattggatgttaaacacaggctctgaggctaacttttttgattatctatcgtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG
species | Physcomitrella patens |
transcript | PP1S76_212V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAEST: gi|67508569|gb|BJ941432.1|BJ941432
genomic: TTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAEST: gi|162250386|gb|FC426248.1|FC426248
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAEST: gi|37824297|gb|BJ582363.1|BJ582363
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAEST: gi|162250385|gb|FC426247.1|FC426247
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAEST: gi|162177237|gb|FC353394.1|FC353394
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAEST: gi|162177238|gb|FC353395.1|FC353395
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAEST: gi|67691788|gb|BJ952021.1|BJ952021
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: TCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAEST: gi|162224579|gb|FC400475.1|FC400475
genomic: TCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: TTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
genomic: TTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
gatgttaaacacaggctctgaggctaacttttttgattatctatcgtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG
taacttttttgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actccaactgctgcgacatgatcagtattttgtgcttgtaaattggatgttaaacacaggctctgaggctaacttttttgattatctatcgtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - tgctgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - cacaggc