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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcaatcaaaaactcatctcttctttattcattctaaacaatcgcctatgcaacagaatcaccaacgttgtgtcacatcattcttcatggccccgtaactctaatcaacagaatttgtaattgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG

Basic information

species Physcomitrella patens
transcript PP1S76_20V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208377714|gb|DC932250.1|DC932250
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208367167|gb|DC935967.1|DC935967
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCA
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCA
EST: gi|208360091|gb|DC939339.1|DC939339
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATANGGGCGACTATCATCCTCANCGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208391086|gb|DC933459.1|DC933459
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208363890|gb|DC943347.1|DC943347
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208390316|gb|DC942039.1|DC942039
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGA
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGA
EST: gi|208353634|gb|DC938743.1|DC938743
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATNGCAATANGGGCGACTATCATCCTCANCGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208370852|gb|DC936890.1|DC936890
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208390998|gb|DC929317.1|DC929317
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATNGCA-TAGGGNCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208386873|gb|DC941577.1|DC941577
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208359616|gb|DC943172.1|DC943172
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208390907|gb|DC942225.1|DC942225
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208363449|gb|DC935242.1|DC935242
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGANT-GCAATAGGGGCGACTATCATCCTCA-CGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208370092|gb|DC940385.1|DC940385
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAAT
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAAT
EST: gi|208392065|gb|DC941913.1|DC941913
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208389268|gb|DC933296.1|DC933296
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208356993|gb|DC930023.1|DC930023
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATANGGGCGACTATCATCCTCANCGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208355855|gb|DC930218.1|DC930218
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208368624|gb|DC939975.1|DC939975
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208386377|gb|DC937044.1|DC937044
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATNGCAATAGGGGCGACTATCATCCTCA-CGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208388702|gb|DC941515.1|DC941515
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208357532|gb|DC934054.1|DC934054
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208357187|gb|DC942765.1|DC942765
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTGAT                         AATGGCGAGCTATCAGGANT-GCAATANGGGCGACTATCATCCTCA-CGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208392541|gb|DC933941.1|DC933941
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208393397|gb|DC942495.1|DC942495
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGAAATTGCAATANGGGCGACTATCATCCTCANCGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208367243|gb|DC939815.1|DC939815
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCANTAGGGGCGACTATCATCCTCA-CGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208390857|gb|DC942203.1|DC942203
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208363630|gb|DC939793.1|DC939793
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208363344|gb|DC943566.1|DC943566
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208368474|gb|DC935997.1|DC935997
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATNGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208371052|gb|DC931540.1|DC931540
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208391100|gb|DC938130.1|DC938130
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208363854|gb|DC943311.1|DC943311
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208389585|gb|DC929468.1|DC929468
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         ANTGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208372919|gb|DC940550.1|DC940550
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
EST: gi|208372997|gb|DC940628.1|DC940628
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATNGCAATANGGGCCGACTATCATCCTCAACGT
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGC-GACTATCATCCTCAACGT
EST: gi|208369539|gb|DC936315.1|DC936315
EST:     GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAAT                         AATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC
genomic: GATTCAACCTCCTGTTCGTTGCGACGGCGGTGTCCACTGGTTCCAGTAATgtgcgcaatc ... ttgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcattcttcatggccccgtaactctaatcaacagaatttgtaattgggtgcagAATGGCGAGCTATCAGGAATTGCAATAGGGGCGACTATCATCCTCAACGTCTTGCTTGCAGG
                       ctctaat  putative branch site (score: 3)
                                    aatttgtaatt  TA-rich tract