1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatcaatatcgatgtgttgatttgagtgatttggctgtgatgtgtgagtttacagtcttgagatggaggtatgtaacgcttgtcttggtgtctgtttcagGGTGTCGGCAATCAAGACACTAAGGTTCTTGTGTTAGCTGCTACAAATACGCCCTACTCTTTGGATCAG
species | Physcomitrella patens |
transcript | PP1S76_197V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGCGAGGCTTCACGTCGTATCAAGACTGAGTTGCTAGTTCAAATGCAG GGTGTCGGCAATCAAGACACTAAGGTTCTTGTGTTAGCTGCTACAAATACGEST: gi|162268434|gb|FC444203.1|FC444203
genomic: AGAGCGAGGCTTCACGTCGTATCAAGACTGAGTTGCTAGTTCAAATGCAGgtcagattgt ... tctgtttcagGGTGTCGGCAATCAAGACACTAAGGTTCTTGTGTTAGCTGCTACAAATACG
EST: AGAGCGAGGCTTCACGTCGTATCAAGACTGAGTTGCTAGTTCAAATGCAG GGTGTCGGCAATCAAGACACTAAGGTTCTTGTGTTAGCTGCTACAAATACGEST: gi|162196818|gb|FC373886.1|FC373886
genomic: AGAGCGAGGCTTCACGTCGTATCAAGACTGAGTTGCTAGTTCAAATGCAGgtcagattgt ... tctgtttcagGGTGTCGGCAATCAAGACACTAAGGTTCTTGTGTTAGCTGCTACAAATACG
EST: TGAGTTGCTAGTTCAAATGCAG GGTGTCGGCAATCAAGACACTAAGGTTCTTGTGTTAGCTGCTACAAATACGEST: gi|208397729|gb|DC911980.1|DC911980
genomic: TGAGTTGCTAGTTCAAATGCAGgtcagattgt ... tctgtttcagGGTGTCGGCAATCAAGACACTAAGGTTCTTGTGTTAGCTGCTACAAATACG
EST: AGAGCGAGGCTTCACGTCGTATCAAGACTGAGTTGCTAGTTCAAATGCAG GGTGTCGGCAATCAAGACACTAAGGTTCTTGTGTTAGCTGCTACAAATACGEST: gi|162196819|gb|FC373887.1|FC373887
genomic: AGAGCGAGGCTTCACGTCGTATCAAGACTGAGTTGCTAGTTCAAATGCAGgtcagattgt ... tctgtttcagGGTGTCGGCAATCAAGACACTAAGGTTCTTGTGTTAGCTGCTACAAATACG
EST: AGAGCGAGGCTTCACGTCGTATCAAGACTGAGTTGCTAGTTCAAATGCAG GGTGTCGGCAATCAAGACACTAAGGTTCTTGTGTTAGCTGCTACAAATACG
genomic: AGAGCGAGGCTTCACGTCGTATCAAGACTGAGTTGCTAGTTCAAATGCAGgtcagattgt ... tctgtttcagGGTGTCGGCAATCAAGACACTAAGGTTCTTGTGTTAGCTGCTACAAATACG
gagtttacagtcttgagatggaggtatgtaacgcttgtcttggtgtctgtttcagGGTGTCGGCAATCAAGACACTAAGGTTCTTGTGTTAGCTGCTACAAATACGCCCTACTCTTTGGATCAG
atgtaac putative branch site (score: 14)
tctgtttc putative PPT
tatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcaatatcgatgtgttgatttgagtgatttggctgtgatgtgtgagtttacagtcttgagatggaggtatgtaacgcttgtcttggtgtctgtttcagGGTGTCGGCAATCAAGACACTAAGGTTCTTGTGTTAGCTGCTACAAATACGCCCTACTCTTTGGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT