1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtttttattaaaagaatgtttattgctttgaagtagtgtacgaggtatttgggagggttgactagggtgatttagatatgatcatgactgacttaatgaactcgagacactagtggcttagaatttagagattgtttttatgttttacagGAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAGTGAAGAACAAGAGCAGTCAACTTCACTTCACATTTTGCTGAGAAAATAA
species | Physcomitrella patens |
transcript | PP1S76_155V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAG GAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAGEST: gi|67698417|gb|BJ958650.1|BJ958650
genomic: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAGgtaagttttt ... tgttttacagGAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAG
EST: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAG GAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAGEST: gi|67574664|gb|BJ947488.1|BJ947488
genomic: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAGgtaagttttt ... tgttttacagGAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAG
EST: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAG GAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAGEST: gi|67574984|gb|BJ947808.1|BJ947808
genomic: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAGgtaagttttt ... tgttttacagGAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAG
EST: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAG GAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTTCATTTGCCTTCAEST: gi|37851568|gb|BJ609576.1|BJ609576
genomic: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAGgtaagttttt ... tgttttacagGAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTT-CATTTGCCTTCA
EST: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAG GAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAG
genomic: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAGgtaagttttt ... tgttttacagGAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAG
atgaactcgagacactagtggcttagaatttagagattgtttttatgttttacagGAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAGTGAAGAACAAGAGCAGTCAACTTCACTTCACATTTTGCTGAGAAAATAA
acttaat putative branch site (score: 6)
tttttat putative PPT
attgtttttatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttattaaaagaatgtttattgctttgaagtagtgtacgaggtatttgggagggttgactagggtgatttagatatgatcatgactgacttaatgaactcgagacactagtggcttagaatttagagattgtttttatgttttacagGAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAGTGAAGAACAAGAGCAGTCAACTTCACTTCACATTTTGCTGAGAAAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG