1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgtcaatgcctcaggaaaggaagtcgacatcgcatctgcgactgctggcgacactccagcttttgagcaatcgctgtagactaatgtgtagtttcattacttcacgcttggaaagaataagtacccctccagctctaggtttagatgctgatcgcggatgtcttcgaattatgatgcgcagATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCATCAGAATAACTTCTGCGAACGTAAATTTTTGAGCTCATGTGAAAAGATAG
species | Physcomitrella patens |
transcript | PP1S75_99V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAG ATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCATEST: gi|162274517|gb|FC450960.1|FC450960
genomic: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAGgtatgtcaat ... tgatgcgcagATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCAT
EST: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAG ATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCATEST: gi|162265777|gb|FC442364.1|FC442364
genomic: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAGgtatgtcaat ... tgatgcgcagATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCAT
EST: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAG ATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCATEST: gi|67578432|gb|BJ950599.1|BJ950599
genomic: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAGgtatgtcaat ... tgatgcgcagATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCAT
EST: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAG ATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCATEST: gi|162272564|gb|FC447709.1|FC447709
genomic: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAGgtatgtcaat ... tgatgcgcagATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCAT
EST: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAG ATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCATEST: gi|67701332|gb|BJ961565.1|BJ961565
genomic: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAGgtatgtcaat ... tgatgcgcagATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCAT
EST: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAG ATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCATEST: gi|18337923|gb|BJ169947.1|BJ169947
genomic: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAGgtatgtcaat ... tgatgcgcagATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCAT
EST: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAG ATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCATEST: gi|67701330|gb|BJ961563.1|BJ961563
genomic: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAGgtatgtcaat ... tgatgcgcagATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCAT
EST: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAG ATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCAT
genomic: TCTACGTTTGCTGGTGACAGCGGCGTGACCTGGGACAATGCACGGAACAGgtatgtcaat ... tgatgcgcagATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCAT
ctccagctctaggtttagatgctgatcgcggatgtcttcgaattatgatgcgcagATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCATCAGAATAACTTCTGCGAACGTAAATTTTTGAGCTCATGTGAAAAGATAG
tgctgat putative branch site (score: 10)
aattatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcaatgcctcaggaaaggaagtcgacatcgcatctgcgactgctggcgacactccagcttttgagcaatcgctgtagactaatgtgtagtttcattacttcacgcttggaaagaataagtacccctccagctctaggtttagatgctgatcgcggatgtcttcgaattatgatgcgcagATTGTGATGCTGAGGGATGAGAGATGGTTATCCCACTGTGCAGTCAGGCATCAGAATAACTTCTGCGAACGTAAATTTTTGAGCTCATGTGAAAAGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA