Sequence
atgc intronic sequence ATGC exonic sequence...taacttcactggagccagacatggggctgatctgtccatgtgacgttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
Basic information
species | Physcomitrella patens |
transcript | PP1S74_168V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os05g04340.2 (Oryza sativa), 3'ss of exon 4
---taacttcactggagccagacatggggctgatctgtcca-tgtgacgttcaaggtg-----gtagaactaggggatgttctgatcgcgagggtaattttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
| ||| | | || | | | ||| || |||| | ||| || | | | || | || | | | || |||| |||| || ||| | || | ||| || ||||||||||| |||||||| ||||| ||||||||||| |||||||| || || || | ||||| | || || |
gtttgtctttagacagatc-gatttatgttgcacttgttcagtgtgttaatttgtgtgttctggtggcgattgatgaacccttcatttcttgaatgatcttgta--tagGCCAAGTGCCTGGAAACCGGTGAGACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGATATAAGAACCGTGAGCTGCAAACAATGCGAGTTCTTGACC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os01g14860.1 (Oryza sativa), 3'ss of exon 4
--------------------------------------------------------------------------taacttcactggagccag-------acatggggctgat---ctgtccatgtgacgttcaaggtggtagaa----ctaggggatgttc-tgatcgcgagggta-----attttg----ttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
||||| ||| | ||| ||| || || | || | | | || || | ||| | | ||| || | | || |||||| || |||||||||||| | |||| || || || || ||||| |||||||| |||||||| ||| | ||||||||||| || ||||||| |||||| || || || |
gttagttgcaacatctttgggttttcatatatttcaccaatcaccaggaagctaagtagctaacttaacatcattaactctactagcaccactttttttgtatgtagcaaattgttgatacacgataaccttctcttgttaagatgtcctaaatgttcttcatgtctgtaatagtgatatcattttgaccattttcagGCAAAATGTCTGGAGACAGGTGAGACAGTTGCTATCAAGAAGGTTCTTCAGGATAAGCGCTACAAGAACCGTGAGCTTCAGACCATGCGCCTTCTTGACC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os06g35530.1 (Oryza sativa), 3'ss of exon 3
taacttcactggagccagacatggggctgatctgtccatgtgacgttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
| ||| | | | | || ||| ||||| ||| | | | |||| | || || | | | || |||||||||||| | |||| || |||||||| || ||||||||||| | |||||||| ||||||||||| |||| | ||||| ||||| |||| |
-------gttagagatat-cttcctgatgttctcaccatg----attctggattacataactttatcgtatt--agtcttgtgcatgtgcatg----cagGCAAAATGCCTTGAGACTGGTGAAACTGTTGCCATTAAGAAGGTCTTACAGGACAAACGATACAAGAACAGAGAGTTACAGATAATGCGATCAATGGATC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G043350_T02 (Zea mays), 3'ss of exon 3
--taacttcactggagccagacatggggctgatctgtccatgtgacgttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
|| | | || | | | || || | | | | | | | | | || | | |||| | | | | | | ||||||||||||||| |||| || ||||| || || ||||||||||| || |||||||| ||||||||||| | || | || || ||||| | || |
gttagcgtttctttttctccaacttggcctagttttttc---tctcactttggctcatat----------tttgttgatggtgcgtgca----taaactcagGCAAAATGCATTGAGACTGGTGAAACCGTTGCAATTAAGAAGGTTCTACAGGACAAAAGATACAAGAATAGGGAGTTACAAATAATGCGATCAATTGACC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM5G835235_T04 (Zea mays), 3'ss of exon 4
------------------------------------------------------------taacttc-actggagccagacatggggctgatctgtc-catgtgacgt-tcaaggtggt----agaactagg-ggatgttctgatcgcgagggtaattt----tgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
|| | ||| | |||| | ||| || | | || |||||| | || || | || | || || | | |||| |||| |||| || || | || | || || ||||| || || |||||||| ||||| |||||| | ||||||||||| ||||| |||| |||||| || || || |
gttagttgcaacaactcctgacttagatatgttttattatgcagctatctgtggtattgctatcccggactagcagttttcatgttttaggtctttcatagcttgtgtgccaaggtcctttttgtaatcagatgcatctcctaatttgcaatgccatttgacctgttcatagGCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAAGACAAGCGTTACAAGAACCGCGAACTGCAGACCATGCGCCTCCTTGACC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA10G01280.1 (Glycine max), 3'ss of exon 4
-taacttcactggagccagacatggggctgatctgtccatgtgacgttcaaggtg-gtagaac-taggggatgttctgatcgcgagggtaattttgttgt-cagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
| | | | | | || || | | | | | | | | | | | | |||| | | | || | | ||| | ||| |||| ||||||| ||| | |||| || |||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| || | |||||| || ||||| |
gttagtcccttatatttag---tgtgcatcttttaattgtataatagtgatgctttgcagaatattgatgttgattttatcctgt------ctttattgtgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGATACAAGAACCGGGAACTGCAAACCATGCGTCTTCTGGACC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA02G01220.3 (Glycine max), 3'ss of exon 4
--taacttcactggagccagacatggggctgatctgtccatgtgacgttcaaggtggt--agaactaggggatgttctgatcgcgagggtaattttgttgt-cagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
|| | | | | | | | | |||| | || | | | | || | | |||||| | | | ||| || | ||||||| ||| | |||| || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||| | || | |||||| || ||||| |
gttagcccc--ttgtatattatttagtgtgcatcttttaattgtatggtagtgatgctttgcagtatattgatgtttactttgtcttt-tgcctttattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGTCTTCTGGATC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA10G28530.2 (Glycine max), 3'ss of exon 4
-taacttcactggagccagacatggggctgatctgtccatgtgacgttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
||| | | | | | | | || | | | ||||| || || || | | || | | || | |||| || ||| | || | || |||||||||||||| || ||||| ||||| |||||||| ||||||||||| || || || | ||||| || || || |
gtaaaatttccagttgactaaaagagatgcatttctttagcc--ttttcaacacaagtgacataattattgccttagttctgacattgggtgtgattgtagGCTAAGTGCTTGGAAACTGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA20G22600.3 (Glycine max), 3'ss of exon 4
-taacttcactggagccagaca--tggggctgatctgtccatgtgacgttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
||| | | || | |||| | ||| | | | | || || | | | || |||| | | || | |||| || ||| | || | ||| |||||||||||||| || ||||| ||||| || ||||| ||||||||||| || || || | ||||| || || || |
gtaaaatta-tgtatccagttgactaaatgagatgcatttctttagccttttcaacacaagtgacataattattgccaattctgaggttgggtgtgattgtagGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGATAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT4G00720.1 (Arabidopsis thaliana), 3'ss of exon 4
taacttcactggagccagacatggggctgatctgtccatg--tgacgttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
| || || || | | ||| | | | || | | | | || | ||| | | ||||| | | |||| || ||| | || | || ||| || || ||||||||||| || ||||| || |||||||||||| ||||||||||||||||||| ||| || |
----------gtaggtggaaattcttatagcaggaacataactaatccttaac-tatttgtgttcccagaa--tttgactttctgtctgatttt-tggatagGCCAAGTGCCTGGAAACGGGTGAACAAGTTGCAATTAAGAAGGTTCTGCAGGATAAAAGATACAAGAACAGAGAACTTCAGATCATGCGTTTGCAAGACC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT3G61160.1 (Arabidopsis thaliana), 3'ss of exon 4
taacttcactggagccagacatggggctgatctgtccatgtgacgttcaaggtggtagaactaggggat--gttctgatcgcgaggg-taattttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
| || | | | || || | | || | || | || ||| || | ||||| ||| |||| || ||| |||||| | ||||| || || || ||||| ||| | ||||||||||||||||| ||| ||||||||||||||||||| |||| || |
--------------------gtaaataaaatttagactcgagatattttatttagttgttttaaaaatttgattttgaagttgattcctggttttgatgt-agGCTAAGTGCTTAGAGACGGAAGAAAAAGTAGCAATAAAGAAAGTGTTACAGGACAAGAGATACAAAAACAGAGAACTTCAGATCATGCGAATGCTTGATC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 4
taacttcactggagccagacatggggctgatctgtccat-gtgacgttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttg--ttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
|| | | || ||| || | | | ||| | | | || | ||| | | || || | | || || ||||||||||||| |||||| ||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||| |||||||| | ||||| || || || |
-------gtaagaatcc-atatctttacgatatgcctgttattttcttccacaaagaacaatttttc-atgctgtcattttctggttttctgtgccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGATATAAGAACCGTGAACTTCAAACTATGCGTCTTCTTGACC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 4
-taacttcactggagccagacat-----ggggctgatctgtccat--gtgacgttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttgttg--tcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
|| | | | || | || || | | || | | | || | ||| || | || | || || | || | | |||||| ||||| |||||| |||| | || ||| | ||||| |||||||||||||| ||||| |||||||||||||| ||||||| || || ||||| | || || |
gtacttggaattgatcttgatataccttgtgagcaattggcctttgggtaattttccagataatattgttctc--atttttttat-----gttttattttgacaatgcagGCTAAATGCCTAGAAACAGGTGAAGCAGTGGCAATTAAGAAGGTGCTGCAGGATAAGAGATACAAGAATAGAGAACTCCAAATTATGCGCGTACTTGACC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv07s0005g02100.t01 (Vitis vinifera), 3'ss of exon 4
----taacttcactggagccagacatggggctgatctgtc-catgtgacgttcaaggtggtagaa---ctaggggatgttctgatc--gcgagggtaa------ttttgttgt-cagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
| || | | | | |||| | |||| |||| | || | || || | || | || || ||| || || | || | |||||||| ||| |||||| || ||||| || || ||||| || || ||||| |||||||||||||||||| |||| | |||| ||||| || ||||| |
gtaagagtttggtgagtgggtaatgggtatctgagtaacggcctgtg-tgttctggctgaaacaaattttatgtcttgatttggtcaaataaggatatatatgcttcttttatgcagGCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAAAAAAGTTCTTCAAGACAAGAGATACAAGAACAGAGAGTTACAGACTATGCGTCTTCTGGACC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 4
taacttcactggagccagacatggggctgatctgtccatgtgacgttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttgttgt-----cagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
|| || || | || ||| | | | | | | |||| | | ||| ||||| || ||| | || | ||||||||| |||||||| || ||||| || || |||||| | |||||||||||||| || ||||| ||||| || || || |
-----------------------------------gtat-tgctagtccaaacagtgcaacaaaagcaggcttt-atcgtttcttctttctctttgggaatgcagGCCAAGTGCTTGGAAACCGGAGAAACCGTGGCTATCAAAAAGGTCCTCCAAGACAAGCGGTACAAGAACCGAGAGCTCCAGATAATGCGCCTCCTCGACC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ10962 (Selaginella moellendorffii), 3'ss of exon 3
taacttcactggagccagacatggggctgatctgtccatgtg-acgttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
|||| | || | | ||||| | | | || | || || | |||||| || ||| | || | ||||| || ||||| || ||||||||| | ||||||||||||||||| ||||| || || || || ||||| || || || |
-------------------------------------gtgtgcaaactcgctttaatcattctaggctaacgtttcttcctgttgg--gcttcact-tcagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCCATCAAGAAGGTGTTACAGGACAAGAGATACAAAAACCGGGAGCTGCAAATAATGCGCCTTCTTGACC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ04915 (Selaginella moellendorffii), 3'ss of exon 3
taacttcactggagccagacatggggctgatctgtccatgtg-acgttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
|||| | || | | ||||| | | | || | || || | | |||| || ||| | || | ||||| || |||||||| ||||||||| | ||||||||||||||||| ||||| || || || || ||||| || || || |
-------------------------------------gtgtgcaaactcgctttaatcattctaggctaacgtttcttcctgttgg--gcttcact-ttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAGGACAAGAGATACAAAAACCGGGAGCTGCAAATAATGCGCCTTCTTGACC
upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ07923 (Selaginella moellendorffii), 3'ss of exon 4
taacttcactggagccagacatggggctgatctgtccatgtgacgttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttgttgt-----cagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
|| || || | || ||| | | | | | | |||| | | ||| ||||| || ||| | || | ||||||||| |||||||| || ||||| || || |||||| | |||||||||||||| || ||||| ||||| || || || |
-----------------------------------gtat-tgctagtccaaacagtgcaacaaaagcaggcttttatcgtttcttctttctctttgggaatgcagGCCAAGTGCTTGGAAACCGGAGAAACCGTGGCTATCAAAAAGGTCCTCCAAGACAAGCGCTACAAGAACCGAGAGCTCCAGATAATGCGCCTCCTCGACCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208347714|gb|DC912903.1|DC912903EST: ATTCAGCAGAACGTGTTGTCGGCACAGGATCATTTGGGATCGTGTTCCAG GCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAN
genomic: ATTCAGCAGAACGTGTTGTCGGCACAGGATCATTTGGGATCGTGTTCCAGgtaatttgct ... ttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAG
EST:
gi|208393031|gb|DC929526.1|DC929526EST: ATTCAGCAGAACGTGTTGTCGGCACAGGATCATTTGGGATCGTGTTCCAG GCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAG
genomic: ATTCAGCAGAACGTGTTGTCGGCACAGGATCATTTGGGATCGTGTTCCAGgtaatttgct ... ttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAG
EST:
gi|162280067|gb|FC456461.1|FC456461EST: ATTCAGCAGAACGTGTTGTCGGCACAGGATCATTTGGGATCGTGTTCCAG GCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAG
genomic: ATTCAGCAGAACGTGTTGTCGGCACAGGATCATTTGGGATCGTGTTCCAGgtaatttgct ... ttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAG
EST:
gi|162171285|gb|FC347223.1|FC347223EST: ATTCAGCAGAACGTGTTGTCGGCACAGGATCATTTGGGATCGTGTTCCAG GCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAG
genomic: ATTCAGCAGAACGTGTTGTCGGCACAGGATCATTTGGGATCGTGTTCCAGgtaatttgct ... ttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
15 (upstream exon),
21 (downstream exon)
Score:
1ACTATCAGTTATTCAGCAGAACGTGTTGTCGGCACAGGATCATTTGGGATCGTGTTCCAGgtaatttgct ... ttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
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atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
ttctgat putative branch site (score: 1)
ttttgtt putative PPT
taattttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taacttcactggagccagacatggggctgatctgtccatgtgacgttcaaggtggtagaactaggggatgttctgatcgcgagggtaattttgttgtcagGCAAAATGCATAGAGAGCGGAGAAACTGTGGCTATTAAGAAGGTGCTTCAGGACAAGAGATACAAGAACCGAGAACTTCAGATCATGCGGCTGCTGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA