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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttacaatcttgtaaagcagtattgttgcttctactggtagtgttgatctaggaaacataatatcgtcttacttttgataacctttgtggatgagtcagGGTGGGGGTGCAAAGCAGCCATTACCTCTTGGAACTATTCCCTTACTTACCATCGAAACCTTCGCTAAACAG

Basic information

species Physcomitrella patens
transcript PP1S71_215V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208372505|gb|DC940780.1|DC940780
EST:     TGGAGATAGCCGGCACCTTATTTGTTACAAATTTCCGACTAGNNNNNNNG                         GGTGGGGGTGCAAAGCAGCCATTACCTCTTGGAACTATTCCCTTACTTACC
genomic: TGGAGATAGCCGGCACCTTATTTGTTACAAATTTCCGACTAGTTTTTTTGgtatgtctta ... gatgagtcagGGTGGGGGTGCAAAGCAGCCATTACCTCTTGGAACTATTCCCTTACTTACC
EST: gi|18350469|gb|BJ182520.1|BJ182520
EST:     TGGAGATAGCCGGCACCTTATTTGTTACAAATTTCCGACTAGNNNNNNNG                         GGTGGGGGTGCAAAGCAGCCATTACCTCTTGGAACTATTCCCTTACTTACC
genomic: TGGAGATAGCCGGCACCTTATTTGTTACAAATTTCCGACTAGTTTTTTTGgtatgtctta ... gatgagtcagGGTGGGGGTGCAAAGCAGCCATTACCTCTTGGAACTATTCCCTTACTTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatctaggaaacataatatcgtcttacttttgataacctttgtggatgagtcagGGTGGGGGTGCAAAGCAGCCATTACCTCTTGGAACTATTCCCTTACTTACCATCGAAACCTTCGCTAAACAG
                               tgataac  putative branch site (score: 2)
         aaacataatat  TA-rich tract